View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_27 (Length: 436)
Name: NF10954A_low_27
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 6236239 - 6236647
Alignment:
| Q |
1 |
agaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcaccggtcaaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6236239 |
agaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcactggtcaaggc |
6236338 |
T |
|
| Q |
101 |
aataatatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaa |
200 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6236339 |
aata-tatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaa |
6236437 |
T |
|
| Q |
201 |
attgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
6236438 |
attgaaaacctaggtgataggtgaaaatctaattttttttttttt---atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaag |
6236534 |
T |
|
| Q |
301 |
tccacatcaggaagaaacaaaaacagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaa |
400 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6236535 |
tctacatcaggaagaaacaaaaatagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaa |
6236634 |
T |
|
| Q |
401 |
gctgggtggtgag |
413 |
Q |
| |
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|| |||||||||| |
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| T |
6236635 |
gcagggtggtgag |
6236647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 6240403 - 6240435
Alignment:
| Q |
2 |
gaaataacacaaaaggtaaacacatccatatct |
34 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
6240403 |
gaaataacacaaaaggtaaacacatccatatct |
6240435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
127 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
226 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
|
| Q |
227 |
atctaa |
232 |
Q |
| |
|
|||||| |
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|
| T |
33891812 |
atctaa |
33891807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
127 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
226 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
|
| Q |
227 |
atctaa |
232 |
Q |
| |
|
|||||| |
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|
| T |
33952436 |
atctaa |
33952441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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