View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_274 (Length: 272)

Name: NF10954A_low_274
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_274
NF10954A_low_274
[»] chr3 (3 HSPs)
chr3 (19-208)||(32368336-32368525)
chr3 (163-253)||(32368534-32368625)
chr3 (54-131)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (43-253)||(26076348-26076559)
chr4 (54-131)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (36-158)||(12370874-12370994)
chr2 (19-116)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (19-166)||(5243245-5243396)
chr7 (19-89)||(35898170-35898240)
chr7 (37-116)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (85-253)||(4958422-4958591)
chr1 (36-131)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (36-89)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (36-89)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (49-149)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 32368336 - 32368525
Alignment:
Q  19 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatcca 118  Q
    ||||||||||||| || ||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||||| ||||| |||| |||||||||||||    
T  32368336 tcacatgatgatagagcagtgattggttgtctcttagtgcaccatgaaattgcagcatcattgaatttgaataggcagccagaagtacttctcctatcca 32368435  T
Q  119 ttctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttca 208  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||    
T  32368436 ttctatctccacaccggtctgaatcagagtatccctctagcttagactctcctttcttgttagtagctggaaacatcgtgccaaacttca 32368525  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 32368534 - 32368625
Alignment:
Q  163 gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaagg-tcctttcacatttctcagtattcttttagctgcagcgagatg 253  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||| ||| ||||||    
T  32368534 gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtattcttttagctacagtgagatg 32368625  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 18645741 - 18645818
Alignment:
Q  54 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 131  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  18645741 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 18645818  T

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Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 26076559 - 26076348
Alignment:
Q  43 ggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaat 142  Q
    |||||||||||  ||||||||||||||||| || |||| || |||||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||    
T  26076559 ggttgtttctttttgcaccatgagattgcaacaccattgaacttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaat 26076460  T
Q  143 cagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagc 241  Q
    |||||||||||||||  | ||| |||| |   || || | ||||||||| | ||||||||||||||| || |||||||||| ||||| ||||||||||||    
T  26076459 cagagtatccctctaattcagcttctcctactttatttgcagctggaaataacaggccaaacttcaatgtacctttcacatatctcaatattcttttagc 26076360  T
Q  242 tgcagcgagatg 253  Q
    ||||| ||||||    
T  26076359 tgcagtgagatg 26076348  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 5721971 - 5722048
Alignment:
Q  54 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 131  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  5721971 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 5722048  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 12370994 - 12370874
Alignment:
Q  36 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcag 135  Q
    |||||||||||||||||| |||||||||||||||||| || |||| || ||||||||||||| | | |||||| |||  ||||||||||||||||| |||    
T  12370994 agtgactggttgtttctttgtgcaccatgagattgcagcaccattgaacttgaataggtagctagaggtgcttttcc--tccattctatctccacaccag 12370897  T
Q  136 tctgaatcagagtatccctctag 158  Q
    |||||||||||||||||||||||    
T  12370896 tctgaatcagagtatccctctag 12370874  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 3461368 - 3461271
Alignment:
Q  19 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 116  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  3461368 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 3461271  T

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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 5243396 - 5243245
Alignment:
Q  19 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaatagg----tagccataagtgcttctccta 114  Q
    ||||||||||||| || | |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |    || ||| |||||||||| |||    
T  5243396 tcacatgatgatagagcattgactggttgcttcttagtacaccatgagattgcatcatcattgaacttgaataagtatatatccagaagtgcttcttcta 5243297  T
Q  115 tccattctatctccacatcagtctgaatcagagtatccctctagcttagcct 166  Q
    |||||||| | |||||| ||||| ||||| |||||||| |||||||||||||    
T  5243296 tccattctctatccacaccagtcagaatctgagtatccttctagcttagcct 5243245  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 35898240 - 35898170
Alignment:
Q  19 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 89  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  35898240 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaa 35898170  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 296638 - 296559
Alignment:
Q  37 gtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 116  Q
    |||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  296638 gtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 296559  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 85 - 253
Target Start/End: Original strand, 4958422 - 4958591
Alignment:
Q  85 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag 184  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| ||  ||||| | ||    
T  4958422 ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag 4958521  T
Q  185 ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatg 253  Q
     ||| || | ||||||||||||||  || |||||||||| ||||| ||| ||||| ||||||| ||||||    
T  4958522 ttgggaataacaggccaaacttcagtgtgcctttcacatgtctcaatatcctttttgctgcagtgagatg 4958591  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 44536499 - 44536594
Alignment:
Q  36 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 131  Q
    ||||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  44536499 agtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcaattagatctccaca 44536594  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 48888 - 48835
Alignment:
Q  36 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 89  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  48888 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 48835  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 28248726 - 28248673
Alignment:
Q  36 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 89  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  28248726 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 28248673  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 1183107 - 1183007
Alignment:
Q  49 ttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagt 148  Q
    ||||| || |||||||| |||||| |||  || || ||||| |  |||||| | ||||||||||||||  |||||||| |||| || |||||||||||||    
T  1183107 ttctttgtacaccatgatattgcaacattgttgaacttgaagacatagccagatgtgcttctcctatcacttctatcttcacaccaatctgaatcagagt 1183008  T
Q  149 a 149  Q
    |    
T  1183007 a 1183007  T

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