View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_28 (Length: 436)

Name: NF10954A_low_28
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_28
NF10954A_low_28
[»] chr4 (10 HSPs)
chr4 (151-424)||(50968204-50968477)
chr4 (308-386)||(6067669-6067747)
chr4 (309-382)||(34505290-34505363)
chr4 (308-386)||(31553694-31553772)
chr4 (62-119)||(50968491-50968548)
chr4 (309-383)||(4690134-4690208)
chr4 (308-382)||(33871041-33871115)
chr4 (309-382)||(52818059-52818132)
chr4 (308-382)||(6071145-6071218)
chr4 (7-46)||(50968549-50968588)
[»] chr8 (7 HSPs)
chr8 (305-386)||(40866295-40866376)
chr8 (308-386)||(7895149-7895227)
chr8 (309-385)||(44415934-44416010)
chr8 (304-386)||(42014301-42014383)
chr8 (308-382)||(24864608-24864682)
chr8 (308-382)||(38085946-38086020)
chr8 (310-383)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (308-386)||(3992803-3992881)
chr6 (308-386)||(7432416-7432494)
chr6 (308-386)||(7441933-7442011)
chr6 (308-386)||(7425621-7425699)
chr6 (310-383)||(7432982-7433055)
chr6 (308-386)||(7418530-7418608)
chr6 (308-386)||(7414581-7414659)
[»] chr3 (9 HSPs)
chr3 (308-382)||(29618312-29618386)
chr3 (304-382)||(41552096-41552174)
chr3 (308-382)||(11580203-11580277)
chr3 (310-382)||(1488013-1488085)
chr3 (310-382)||(2031252-2031324)
chr3 (310-382)||(35679472-35679544)
chr3 (308-382)||(35687869-35687943)
chr3 (308-382)||(52638656-52638730)
chr3 (308-355)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (304-383)||(3197563-3197642)
chr2 (301-386)||(34643000-34643085)
chr2 (302-382)||(39082462-39082542)
chr2 (307-382)||(24359790-24359865)
chr2 (308-382)||(4713110-4713184)
chr2 (308-386)||(8884447-8884525)
chr2 (308-383)||(36772397-36772472)
chr2 (308-383)||(36793511-36793586)
chr2 (308-383)||(37559326-37559401)
chr2 (308-382)||(42968150-42968224)
chr2 (308-382)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (306-383)||(37022194-37022271)
chr7 (308-388)||(30034301-30034381)
chr7 (306-386)||(46075148-46075228)
chr7 (304-382)||(25287956-25288034)
chr7 (310-386)||(46972135-46972211)
chr7 (304-382)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (303-384)||(23058051-23058132)
chr1 (307-386)||(30340907-30340986)
chr1 (306-382)||(37369512-37369588)
chr1 (310-384)||(23057679-23057753)
chr1 (310-384)||(23057864-23057938)
chr1 (310-384)||(23061980-23062054)
chr1 (304-386)||(30320741-30320823)
chr1 (315-368)||(23057568-23057621)
chr1 (315-368)||(23061869-23061922)
chr1 (310-383)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (308-383)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 151 - 424
Target Start/End: Complemental strand, 50968477 - 50968204
Alignment:
Q  151 atctaggattcttaccaatgtcagaggactctacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctacgtgcaaccat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50968477 atctaggattcttaccaatgtcagaggactctacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctatgtgcaaccat 50968378  T
Q  251 gctatccggtttttctataacataatattttattgatcaagagaatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcg 350  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968377 gctatccggtttttctataacataatattttaatgatcaagaggatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcg 50968278  T
Q  351 agaggcacggggttcgatcccccgcatctccattttataatttcaaatattccttttttcgcttattacatatt 424  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50968277 agaggcacggggttcgatcccccgcatctccattttttaatttcaaatattccttttttcgcttattacatatt 50968204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 6067669 - 6067747
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||    
T  6067669 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccatttt 6067747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  309 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 31553694 - 31553772
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 31553772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 50968548 - 50968491
Alignment:
Q  62 attgaaggcttcaagagaaaaatgaaaagtgattatgaagccaatacctgtttggcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968548 attgaaggcttcaagagaaaaatgaaaagtgattatgaagccaatacctgtttggcag 50968491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 4690208 - 4690134
Alignment:
Q  309 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 4690134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 33871115 - 33871041
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  33871115 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  309 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 6071145 - 6071218
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||  | ||||| ||| |||||||||||||    
T  6071145 atggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctcca 6071218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 50968588 - 50968549
Alignment:
Q  7 aataagtcgtaaggttatcaaacaattttttgctacaact 46  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  50968588 aataagtggtaaggttatcgaacaattttttgctacaact 50968549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 40866376 - 40866295
Alignment:
Q  305 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866376 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 40866295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7895227 - 7895149
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  7895227 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatttt 7895149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 44415934 - 44416010
Alignment:
Q  309 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattt 385  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattt 44416010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 42014301 - 42014383
Alignment:
Q  304 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  42014301 caacttgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccatttt 42014383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 24864608 - 24864682
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  24864608 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 9963358 - 9963285
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 9963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 3992881 - 3992803
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992881 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 3992803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7432494 - 7432416
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 7432416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7442011 - 7441933
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccatttt 7441933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7425699 - 7425621
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| | ||| |||||||||||||||||    
T  7425699 atggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccatttt 7425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 7433055 - 7432982
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||| |||||| ||||| ||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccat 7432982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7418608 - 7418530
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| |||||| || |||||||| ||||| |||||| |||||| | ||| |||| ||||||||||||    
T  7418608 atggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccatttt 7418530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 7414659 - 7414581
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||| | |||||||||||||||||| ||||| |||||| | |||| ||||| ||  ||| |||||||||    
T  7414659 atggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgataccttgcaactccatttt 7414581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 41552096 - 41552174
Alignment:
Q  304 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  41552096 caacatggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 11580203 - 11580277
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  11580203 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 35679472 - 35679544
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 35692217 - 35692264
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 355  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 35692264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 3197563 - 3197642
Alignment:
Q  304 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3197563 caacctggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 34643085 - 34643000
Alignment:
Q  301 tttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  34643085 tttcaacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 34643000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 39082462 - 39082542
Alignment:
Q  302 ttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  39082462 ttcatcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 24359790 - 24359865
Alignment:
Q  307 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  24359790 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 8884447 - 8884525
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  8884447 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 8884525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 36772472 - 36772397
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36772397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 36793586 - 36793511
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36793511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 37559401 - 37559326
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  37559401 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 37559326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 37022271 - 37022194
Alignment:
Q  306 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  37022271 acatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 37022194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 308 - 388
Target Start/End: Original strand, 30034301 - 30034381
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttat 388  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttat 30034381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 46075228 - 46075148
Alignment:
Q  306 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  46075228 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 46075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 25287956 - 25288034
Alignment:
Q  304 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  25287956 caacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 46972211 - 46972135
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccatttt 46972135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 34984508 - 34984430
Alignment:
Q  304 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  34984508 caacaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 23058132 - 23058051
Alignment:
Q  303 tcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 384  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  23058132 tcaacaaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatt 23058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 386
Target Start/End: Complemental strand, 30340986 - 30340907
Alignment:
Q  307 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||||||    
T  30340986 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccatttt 30340907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 37369588 - 37369512
Alignment:
Q  306 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 382  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  37369588 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 23057753 - 23057679
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 384  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 23057938 - 23057864
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 384  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccatt 23057864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 23062054 - 23061980
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 384  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23061980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 386
Target Start/End: Complemental strand, 30320823 - 30320741
Alignment:
Q  304 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 386  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||||||    
T  30320823 caacttggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccatttt 30320741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 23057621 - 23057568
Alignment:
Q  315 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 368  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 23061922 - 23061869
Alignment:
Q  315 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 368  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23061869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 43065996 - 43066074
Alignment:
Q  310 ggggatgtagctcaaatggtagagcgctcgc-----tttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||| ||||||||||||||||     || |||||||||||| |||||| ||||| ||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccat 43066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 2626146 - 2626071
Alignment:
Q  308 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 383  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  2626146 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University