View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_280 (Length: 270)
Name: NF10954A_low_280
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_280 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 34690822 - 34690944
Alignment:
| Q |
21 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
120 |
Q |
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| T |
34690822 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
34690921 |
T |
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| Q |
121 |
gtcattattagtatttattagaa |
143 |
Q |
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| T |
34690922 |
gtcattattagtatttattagaa |
34690944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 34691008 - 34691049
Alignment:
| Q |
208 |
cattgtaacttactgtcatagagcatgagacctcgttcttat |
249 |
Q |
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| T |
34691008 |
cattgtaacttactgtcatagagcatgagacctcgatcttat |
34691049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 26988746 - 26988868
Alignment:
| Q |
21 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
120 |
Q |
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| T |
26988746 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
26988845 |
T |
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| Q |
121 |
gtcattattagtatttattagaa |
143 |
Q |
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| T |
26988846 |
gtcataattagtatttattagaa |
26988868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 27076513 - 27076447
Alignment:
| Q |
21 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27076513 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggtaat |
27076447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 21432814 - 21432896
Alignment:
| Q |
21 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcacc |
104 |
Q |
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| T |
21432814 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatgcacc |
21432896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 27028074 - 27028130
Alignment:
| Q |
31 |
cgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat |
87 |
Q |
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| T |
27028074 |
cgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggtaat |
27028130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 27099615 - 27099551
Alignment:
| Q |
21 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggta |
85 |
Q |
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||||||||||| ||||| |||| |||||||||| || |||||| ||||||||||||||||||||| |
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| T |
27099615 |
ttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggta |
27099551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 27151628 - 27151687
Alignment:
| Q |
23 |
cccttcatcgtttgagccc-agaagaaatgcatttaaaaacccatacagattctctagaa |
81 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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| T |
27151628 |
cccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaa |
27151687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 26988933 - 26988974
Alignment:
| Q |
208 |
cattgtaacttactgtcatagagcatgagacctcgttcttat |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26988933 |
cattgtaacttactgtcatagagcatgagacctcgatcttat |
26988974 |
T |
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