View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_282 (Length: 270)

Name: NF10954A_low_282
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_282
NF10954A_low_282
[»] chr2 (2 HSPs)
chr2 (141-239)||(41812578-41812676)
chr2 (87-143)||(41812355-41812411)
[»] chr4 (1 HSPs)
chr4 (2-78)||(28067754-28067830)
[»] chr5 (1 HSPs)
chr5 (36-75)||(20252008-20252047)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 41812578 - 41812676
Alignment:
Q  141 ctgatctttatcgagaccagaagggggcattccatttgcggccattgttgattgtaagctgcaaaactaaaccctaaaactttcgattcgcttcgatat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41812578 ctgatctttatcgagaccagaagggggcattccatttgcggccattgttgattgtaagctgcaaaactaaaccctaaaactttcgattcgcttcaatat 41812676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 41812355 - 41812411
Alignment:
Q  87 cttgttgaacaattcaaccctatactccatctctttttcagccattccaaatatctg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812355 cttgttgaacaattcaaccctatactccatctctttttcagccattccaaatatctg 41812411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 28067830 - 28067754
Alignment:
Q  2 caagttctcccaaacatagcacatctgnnnnnnngatgatccgacttttcattaagaccacaaccacctacacagaa 78  Q
    |||||||||||||||||||||||||||       ||||||||||  ||||||||||||||||||||||||| |||||    
T  28067830 caagttctcccaaacatagcacatctgaaaaaaagatgatccgatgtttcattaagaccacaaccacctacgcagaa 28067754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 20252008 - 20252047
Alignment:
Q  36 gatgatccgacttttcattaagaccacaaccacctacaca 75  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  20252008 gatgatccgacgtttcattaagaccacaaccaccgacaca 20252047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University