View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_287 (Length: 267)
Name: NF10954A_low_287
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_287 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0542 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 4997635 - 4997372
Alignment:
| Q |
4 |
tccaagaatattcaaccacgtcattctttaatagaattaaaaattaattttagaaacaaattagtgtaaaccatccggaacttcacaaaaccggcgatgc |
103 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4997635 |
tccaataaaattcagccacgtcattctttaatagaattaaaaattaattttagaaacaaattagtgcaaaccatccggaacttcacaaaaccggcgatgc |
4997536 |
T |
|
| Q |
104 |
aagacacccttcatacagatgtgagattttggaattggagatgatgtattattatttttgattacatgatgaaattgggggataacacccaccatgagag |
203 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4997535 |
aaggcacccttcatacagatgtgagattttggaattggagatgatgtattattatttttggttacatgatgaaattgggggataacacccaccatgagag |
4997436 |
T |
|
| Q |
204 |
ttcaaagactgatgtgtgggaaagaaagccatggatcttctacctttctcttccaatataatga |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4997435 |
ttcaaagactgatgtgtgggaaagaaagccatggatcttctacctttctcttccaatataatga |
4997372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 44541818 - 44541746
Alignment:
| Q |
188 |
acacccaccatgagagttcaaagactgatgtgtgggaaagaaagccatggatcttctacctttctcttccaat |
260 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
44541818 |
acacccaccaagagtgttcaaaaactgatgtgtgggaaagaaaacggtggatcttctacctttcagttccaat |
44541746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 44541917 - 44541865
Alignment:
| Q |
108 |
cacccttcatacagatgtgagattttggaattggagatgatgtattattattt |
160 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
44541917 |
cacccttcatagagatgtgagattttggaattggggatggtgtattattattt |
44541865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 55160361 - 55160393
Alignment:
| Q |
28 |
tctttaatagaattaaaaattaattttagaaac |
60 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
55160361 |
tctttaattgaattaaaaattaattttagaaac |
55160393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 9362861 - 9362913
Alignment:
| Q |
108 |
cacccttcatacagatgtgagattttggaattggagatgatgtattattattt |
160 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
9362861 |
cacccttcatagagatgtgagattttggaattggggatggtgtattattattt |
9362913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 9362960 - 9363032
Alignment:
| Q |
188 |
acacccaccatgagagttcaaagactgatgtgtgggaaagaaagccatggatcttctacctttctcttccaat |
260 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
9362960 |
acacccaccaagagtgttcaaaaactgatgtgtgggaaagaaaacggtggatcttctacctttcagttccaat |
9363032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 9826 - 9862
Alignment:
| Q |
26 |
attctttaatagaattaaaaattaattttagaaacaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9826 |
attctttaatagaattaaaaattaattttaaaaacaa |
9862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University