View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_288 (Length: 267)
Name: NF10954A_low_288
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_288 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 25988697 - 25988481
Alignment:
| Q |
16 |
gacatcaggcttagttgaaactcgagttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaag |
115 |
Q |
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| T |
25988697 |
gacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaag |
25988598 |
T |
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| Q |
116 |
cacattggatgtccattatagaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988597 |
cacattggatgtccattatagaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaa |
25988498 |
T |
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| Q |
216 |
ctaagacaaacaaggat |
232 |
Q |
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||||||||||||||||| |
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| T |
25988497 |
ctaagacaaacaaggat |
25988481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 25320973 - 25320891
Alignment:
| Q |
135 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
217 |
Q |
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| T |
25320973 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
25320891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 26150666 - 26150584
Alignment:
| Q |
135 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
217 |
Q |
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| T |
26150666 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
26150584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 25321046 - 25320975
Alignment:
| Q |
16 |
gacatcaggcttagttgaaactcgagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
87 |
Q |
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|||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25321046 |
gacatcagacttagttgaagctcaagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
25320975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 26150739 - 26150668
Alignment:
| Q |
16 |
gacatcaggcttagttgaaactcgagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
87 |
Q |
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|||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26150739 |
gacatcagacttagttgaagctcaagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
26150668 |
T |
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