View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_292 (Length: 266)
Name: NF10954A_low_292
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_292 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 37324583 - 37324845
Alignment:
| Q |
1 |
tcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatgg |
100 |
Q |
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| T |
37324583 |
tcaccatcattagtcccatctcctcttgtgatatagaagtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatgg |
37324682 |
T |
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| Q |
101 |
atcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatg |
200 |
Q |
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| T |
37324683 |
atcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctataaataccatgcttggttttggtcccgacacaatg |
37324782 |
T |
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| Q |
201 |
tcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccaatattcttggagat |
263 |
Q |
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| T |
37324783 |
tcatgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccagcattgttggagat |
37324845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 37317023 - 37317281
Alignment:
| Q |
1 |
tcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatgg |
100 |
Q |
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| T |
37317023 |
tcaccatcattagtcccatctcctcttgtgatattgaagtgtaaattccttgagccttacccacaagtttcgagtcacgttcaggaccagcagtcaatgg |
37317122 |
T |
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| Q |
101 |
atcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatg |
200 |
Q |
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| T |
37317123 |
gtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatg |
37317222 |
T |
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| Q |
201 |
tcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccaatattcttgg |
259 |
Q |
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| T |
37317223 |
tcgtgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccaacattgttgg |
37317281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 37320602 - 37320850
Alignment:
| Q |
1 |
tcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |
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| T |
37320602 |
tcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagttttgattcacgttcgggtccagccgtcaaggg |
37320701 |
T |
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| Q |
101 |
atcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatg |
200 |
Q |
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| T |
37320702 |
gtcatccatcgccacaactgtcccgaatggcaaggcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatg |
37320801 |
T |
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| Q |
201 |
tcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaaccca |
249 |
Q |
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| T |
37320802 |
tcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaaccca |
37320850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 37306680 - 37306927
Alignment:
| Q |
3 |
accatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggat |
102 |
Q |
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|||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||| |||||| |||||| |||| |
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| T |
37306680 |
accatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtcaacggat |
37306779 |
T |
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| Q |
103 |
cgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttggttttggtcctgacacgatgtc |
202 |
Q |
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| T |
37306780 |
catccatggccaccactgtcccgaatggaagagagttttcagccttgccgttgggctcggctactatcactgtgcttgctttggggccttccataacgtc |
37306879 |
T |
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| Q |
203 |
gtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccaa |
250 |
Q |
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| T |
37306880 |
gtggaaatagaagtgaaggtgggtgaatttctcttcttgaaaacccaa |
37306927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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