View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_293 (Length: 266)

Name: NF10954A_low_293
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_293
NF10954A_low_293
[»] chr4 (6 HSPs)
chr4 (1-266)||(4122483-4122748)
chr4 (2-249)||(4319152-4319405)
chr4 (2-248)||(4346555-4346804)
chr4 (2-211)||(4132521-4132718)
chr4 (2-252)||(4337094-4337341)
chr4 (2-250)||(4362744-4362995)
[»] chr6 (13 HSPs)
chr6 (2-137)||(5177931-5178066)
chr6 (2-133)||(5279756-5279887)
chr6 (2-142)||(5126592-5126732)
chr6 (2-134)||(5688874-5689006)
chr6 (3-113)||(5242504-5242614)
chr6 (2-122)||(5065432-5065552)
chr6 (2-108)||(5346221-5346327)
chr6 (10-111)||(5100812-5100913)
chr6 (10-111)||(5135913-5136014)
chr6 (4-113)||(5427094-5427203)
chr6 (11-123)||(5098412-5098524)
chr6 (36-104)||(5253759-5253827)
chr6 (50-106)||(5283223-5283279)
[»] chr7 (1 HSPs)
chr7 (10-113)||(36212913-36213016)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4122748 - 4122483
Alignment:
Q  1 aagagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatat 100  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122748 aagagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatat 4122649  T
Q  101 atgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgttgttggtggtgatgaaaatgaatgcgctgccaagagggtctctct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4122648 atgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgttgttggtggtgctgaaaatgaatgcgctgccaagagggtctctct 4122549  T
Q  201 gcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaaactctagtagatgaatga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122548 gcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaaactctagtagatgaatga 4122483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 4319405 - 4319152
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||| |||||||||||| ||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4319405 agagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatata 4319306  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgttgttggt------ggtgatgaaaatgaatgcgctgccaagagggtc 195  Q
    |||||||||| |||  |||| | | |||||||| ||| ||||| ||||||||||| ||| |      ||||||||||||||||| ||||||| |||| ||    
T  4319305 tgatgaaccagtcgtcgaaatattggagcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctgccatgaggatc 4319206  T
Q  196 tctctgcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaaa 249  Q
    ||||  ||||||||||  | |||||||  | |||||| ||| ||||||||||||    
T  4319205 tctcgccaagtagagcctacagatgattttgaacaaaaacagaaaagaagaaaa 4319152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 4346555 - 4346804
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||| || |||| |||||||||| |||||||| ||||||||| ||||||||| | |  |||| | ||||||||| ||||||| ||||||||||||||||    
T  4346555 agagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcatata 4346654  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatg---ttgttggtggtgatgaaaatgaatgcgctgccaagagggtctct 198  Q
    |||||||||||| |  ||||||||||| || ||  |||||||| ||| |||||   |||||||||||||||||||||||||| || |||||||| | |||    
T  4346655 tgatgaaccaattgacgaaaaaatagaccattgtgatgcaccagatatgaatgttattgttggtggtgatgaaaatgaatgctcttccaagaggatttct 4346754  T
Q  199 ctgcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaa 248  Q
    |  |||||||||  || ||||||| |||| ||||||||||||||||||||    
T  4346755 cctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaa 4346804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 4132718 - 4132521
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| |||||||||||||||| |||||||| ||| ||||||||||||   ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4132718 agagagtagtatcaaatatggaacctggtgacaaagtcgagattgttgtt---tttgggaacagtttcattgtgatgaagacagcagtttatctcatata 4132622  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgttgttggtggtgatgaaaatgaatgcgctgccaagagggtctctctg 201  Q
    |||||||||||| ||||||||  | | |||||| |||||||     ||||    || | ||||||||||||||||||| |||||||||||| || ||||     
T  4132621 tgatgaaccaattggtgaaaatttggggcaatgtcatgcac-----aaga----tggtagtggtgatgaaaatgaatgtgctgccaagaggttcactctt 4132531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 4337094 - 4337341
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    |||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||    
T  4337094 agagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatata 4337193  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgtt---gttg---gtggtgatgaaaatgaatgcgctgccaagagggtc 195  Q
    | ||||          |||||| | |||||||| ||||||||| || ||||||||   ||||   |||||||| |||||||||| |||||||||||| ||    
T  4337194 tcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagaggatc 4337284  T
Q  196 tctctgcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaaactc 252  Q
    ||||| ||||||||||    |||||||   ||||||| ||| |||||||||||||||    
T  4337285 tctcttcaagtagagcctgcagatgatttaaaacaaaaacagaaaagaagaaaactc 4337341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 4362744 - 4362995
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    |||||||| ||||||||||||||| |||||||| ||||||||| ||| ||||  | |  |||| | ||||||||| ||||||| ||||||||||||||||    
T  4362744 agagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatata 4362843  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatg---ttgttggtggtgatgaaaatgaatgcgctgccaagagggtctct 198  Q
    |||||||||||| |  | |||||| || || ||  || | | | ||| |||||   |||||||||||||||||||||||||| || ||||||  || |||    
T  4362844 tgatgaaccaattgacggaaaaatggaccactgtgattcccaagatacgaatgttattgttggtggtgatgaaaatgaatgctcttccaagattgtttct 4362943  T
Q  199 ctgcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaaac 250  Q
    |  |||||||||  || ||||||| |||| ||||||||||||||||||||||    
T  4362944 cctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaaac 4362995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 5177931 - 5178066
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||||||| ||| |||| | || ||| ||||||| |||||||||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  5177931 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtata 5178030  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgcca 137  Q
    |||||||||||| || |||||||| |||||||||||    
T  5178031 tgatgaaccaattggagaaaaaatggagcaatgcca 5178066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 5279756 - 5279887
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||||||| ||| |||| | || ||| ||||||| |||||||||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  5279756 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtata 5279855  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaat 133  Q
    |||||||||||| || |||||||| |||||||    
T  5279856 tgatgaaccaattggagaaaaaatggagcaat 5279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 5126732 - 5126592
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||||||| ||| |||  |||| ||| ||| ||||||||||||||||||   ||| |||||||||||| ||||||| | ||||||||||||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcac 142  Q
    |||||||||||| |||||||  ||  ||||||| |||||||    
T  5126632 tgatgaaccaattggtgaaactatgaagcaatgtcatgcac 5126592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 5689006 - 5688874
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||||||| ||| |||| | || ||| ||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  5689006 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtata 5688907  T
Q  102 tgatgaaccaatcggtgaaaaaatagagcaatg 134  Q
    ||||||||||||  ||||||| || ||||||||    
T  5688906 tgatgaaccaattcgtgaaaatatggagcaatg 5688874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  3 gagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatat 102  Q
    |||||| |||| || ||| |||| |||| ||| ||||||| | ||| |||||||||  |||||||||||||||| |||||||  |||||||||| |||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  103 gatgaaccaat 113  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 5065552 - 5065432
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||||||| ||| |||| |||  | | ||||||  |||||||||||||||  ||| ||||| |||||| || |||| ||||||||||||||||    
T  5065552 agagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatata 5065453  T
Q  102 tgatgaaccaatcggtgaaaa 122  Q
    |||||||||||| | ||||||    
T  5065452 tgatgaaccaattgctgaaaa 5065432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 5346221 - 5346327
Alignment:
Q  2 agagagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 101  Q
    ||||||| ||||||| ||| |||| |||| ||| ||||||| |||| |||||| |||  ||  |||||||||||| ||||||| || |||||||||||||    
T  5346221 agagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatata 5346320  T
Q  102 tgatgaa 108  Q
    |||||||    
T  5346321 tgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 5100913 - 5100812
Alignment:
Q  10 gtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaac 109  Q
    ||||||| ||| ||||  ||| ||| ||||||| | |||||||||||||  ||||||||||||||||  |||||| ||||||||||| |||| |||||||    
T  5100913 gtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaac 5100814  T
Q  110 ca 111  Q
    ||    
T  5100813 ca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 5136014 - 5135913
Alignment:
Q  10 gtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaac 109  Q
    ||||||| ||| ||||  ||| ||| ||||||| | |||||||||||||  ||||||||||||||||  |||||| ||||||||||| |||| |||||||    
T  5136014 gtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaac 5135915  T
Q  110 ca 111  Q
    ||    
T  5135914 ca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  4 agagtggtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatg 103  Q
    ||||| ||||||| ||| |||| |||| ||| | ||||| | ||| |||||||||  ||||||||| |||||| |||||||  |||||||||| ||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  104 atgaaccaat 113  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 5098412 - 5098524
Alignment:
Q  11 tatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaacc 110  Q
    |||||| ||| |||| |||| ||| ||||||| |  |||||||||| |  ||||||||||||||||  |||||| ||||||||||  ||||||||||||     
T  5098412 tatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaaca 5098511  T
Q  111 aatcggtgaaaaa 123  Q
    ||| |||||||||    
T  5098512 aattggtgaaaaa 5098524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 5253759 - 5253827
Alignment:
Q  36 agtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatga 104  Q
    ||||||| |||||||||||||||  |||||||||||||||| || |||  |||||||||||||||||||    
T  5253759 agtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 5283279 - 5283223
Alignment:
Q  50 ttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatg 106  Q
    ||||||||| ||||||||||||||||| ||||||| || |||||||  |||||||||    
T  5283279 ttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 36213016 - 36212913
Alignment:
Q  10 gtatcaaatatggaacatggtgacagagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaac 109  Q
    ||||||| ||| |||| |||||| | | ||||| |||||||||||||||  |||| ||||||||||| ||||||| |  |||||||||| ||||||||||    
T  36213016 gtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatgaac 36212917  T
Q  110 caat 113  Q
    ||||    
T  36212916 caat 36212913  T

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