View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_295 (Length: 264)
Name: NF10954A_low_295
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_295 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 55374568 - 55374831
Alignment:
| Q |
1 |
gaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaagtaggacaagcacgtcttgtgaaattgtcatgcttgg |
100 |
Q |
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| T |
55374568 |
gaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaagtaggacaagcacgtcttgtgaaattctcatgcttgg |
55374667 |
T |
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| Q |
101 |
attcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttctaaatatttaacaaatttgtcaattatgctagaagttacaatg |
200 |
Q |
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| T |
55374668 |
attcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttttaaatatttaactaatttgtcaattatgctagaagttacaatg |
55374767 |
T |
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| Q |
201 |
gagcctagtttagattaactttaattcgtttatgaaaacttatcaacttacataagtatatatt |
264 |
Q |
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| T |
55374768 |
gagcctaatttagattaactttaattcgtttatgaaaacttatcaacttacataagtatatatt |
55374831 |
T |
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