View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_297 (Length: 263)
Name: NF10954A_low_297
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_297 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 1313677 - 1313426
Alignment:
| Q |
7 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
106 |
Q |
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| T |
1313677 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
1313578 |
T |
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| Q |
107 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaacccattgtatccagccgtgggaaagtctgtggt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
1313577 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagcagctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgat |
1313478 |
T |
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| Q |
207 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
258 |
Q |
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| T |
1313477 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
1313426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 1294666 - 1294415
Alignment:
| Q |
7 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
106 |
Q |
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| T |
1294666 |
ttggtgttgttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggt |
1294567 |
T |
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| Q |
107 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaacccattgtatccagccgtgggaaagtctgtggt |
206 |
Q |
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| T |
1294566 |
cgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgat |
1294467 |
T |
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| Q |
207 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
258 |
Q |
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| T |
1294466 |
ggttgtggagtctgttacgaaggcgaaggttattcagagataccttggtgat |
1294415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 22576 - 22325
Alignment:
| Q |
7 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
106 |
Q |
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| T |
22576 |
ttggtgttgttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggt |
22477 |
T |
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| Q |
107 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaacccattgtatccagccgtgggaaagtctgtggt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||| | |
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| T |
22476 |
cgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgat |
22377 |
T |
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| Q |
207 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
258 |
Q |
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| T |
22376 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
22325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 27946993 - 27946936
Alignment:
| Q |
162 |
atttacgggaaacccattgtatccagccgtgggaaagtctgtggtggttgtggagtct |
219 |
Q |
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| T |
27946993 |
atttacgggaaaatcactttatccaccggtgggaaaatctgtggtggttgtggagtct |
27946936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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