View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_3 (Length: 624)

Name: NF10954A_low_3
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_3
NF10954A_low_3
[»] chr5 (2 HSPs)
chr5 (18-359)||(38815437-38815781)
chr5 (355-613)||(38815928-38816186)
[»] chr7 (2 HSPs)
chr7 (223-320)||(39079876-39079973)
chr7 (271-328)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (223-320)||(19810946-19811043)
[»] chr2 (3 HSPs)
chr2 (381-460)||(5424847-5424925)
chr2 (256-302)||(33455859-33455905)
chr2 (266-311)||(7252252-7252297)
[»] chr8 (1 HSPs)
chr8 (223-277)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (272-318)||(2115530-2115576)
chr6 (225-278)||(18286713-18286766)
[»] chr3 (1 HSPs)
chr3 (266-311)||(1348868-1348913)
[»] scaffold1034 (1 HSPs)
scaffold1034 (245-320)||(819-895)
[»] chr4 (1 HSPs)
chr4 (409-485)||(22866994-22867069)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 38815437 - 38815781
Alignment:
Q  18 caccacacaa-gaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815437 caccacacaaagaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca 38815536  T
Q  117 atgaaggaaatttaaaagccaaatttaagatggctaggggcagaccacaatcaaggcaaaatttccaacac--tgcctcacaacctggcataaattgggc 214  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |    
T  38815537 atgaaggaaatttaaaagccaaatttaagatggctaggggaagaccacaatcaaggcaaaatttccaacaccctgcctcacaacctggcataaattggac 38815636  T
Q  215 taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815637 taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg 38815736  T
Q  315 gcttgtcaggtgcgcactgtccaaacttacaagcactactactta 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38815737 gcttgtcaggtgcgcactgtccaaacttacaagcactactactta 38815781  T

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Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 355 - 613
Target Start/End: Original strand, 38815928 - 38816186
Alignment:
Q  355 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgcc 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38815928 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacccaaatgcc 38816027  T
Q  455 gcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactagggttacatt 554  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38816028 gcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt 38816127  T
Q  555 tctatcttatccaattaccttcacagaatcacatgcacaattatcataactcagtgaaa 613  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38816128 tctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaaa 38816186  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 39079876 - 39079973
Alignment:
Q  223 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 320  Q
    |||||||||| || || ||||| ||||||||||||||| ||| |||  ||||||| | ||||||||| | |||| | |||| ||||||| ||||||||    
T  39079876 tggacaatgcaggaagcccaacgacagatctaggataggctctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgt 39079973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
Q  271 catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg 328  Q
    ||||||||| ||||||||||| |||| |||||| || ||||| ||||||| |||||||    
T  21048692 catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg 21048749  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 19810946 - 19811043
Alignment:
Q  223 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 320  Q
    ||||| ||||||| || ||  ||||||||||||||||| ||| |||| ||||||| | ||||||||  | |||| |||||| ||||||| ||||||||    
T  19810946 tggacgatgcgggaagccctgcaacagatctaggatagtctctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgt 19811043  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 460
Target Start/End: Original strand, 5424847 - 5424925
Alignment:
Q  381 gggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaatt 460  Q
    ||||||||||||  ||||||||   ||||||||||||||||||||| ||  |||||| |||||||| ||| |||||||||    
T  5424847 gggactaaacccaccctctcaaaggcaacacaatgaaggtgttggaggctgcaatgaaggaaaacc-aaaggccgcaatt 5424925  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 33455905 - 33455859
Alignment:
Q  256 gatagactccgatatcatcttagagtttgggttgagtctaattcaac 302  Q
    ||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  33455905 gatagactctgataccatcttagaatttgggttgagtctaactcaac 33455859  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 7252297 - 7252252
Alignment:
Q  266 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 311  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  7252297 gataccatcttagaatttgggttgagcctaactcaaccctacaaaa 7252252  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 25971227 - 25971173
Alignment:
Q  223 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatctta 277  Q
    ||||| ||||||| |||||||||||||||||||||||| ||| |||  |||||||    
T  25971227 tggacgatgcgggaagtccaacaacagatctaggataggctctgattccatctta 25971173  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
Q  272 atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt 318  Q
    |||||| | |||||||||||||||||| |||||||||||| ||||||    
T  2115576 atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt 2115530  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 18286766 - 18286713
Alignment:
Q  225 gacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttag 278  Q
    ||||||||||| || || |||||||||||| ||||| ||| |||||||||||||    
T  18286766 gacaatgcgggaagcccgacaacagatctacgataggctctgatatcatcttag 18286713  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 1348868 - 1348913
Alignment:
Q  266 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 311  Q
    |||||||||||| | |||||||||||||||| |||||| |||||||    
T  1348868 gatatcatcttaaaatttgggttgagtctaactcaaccatacaaaa 1348913  T

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Target: scaffold1034 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 895 - 819
Alignment:
Q  245 aacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccc-tacaaaatcggcttgt 320  Q
    |||||||||  | ||||||| |||||||||||||| |||| |||  | |||||||||||| ||||||||| ||||||    
T  895 aacagatcttagttagactctgatatcatcttagaatttgagttaggcctaattcaacccttacaaaatcagcttgt 819  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 485
Target Start/End: Complemental strand, 22867069 - 22866994
Alignment:
Q  409 cacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaat 485  Q
    ||||| |||||||||||||||  |||||| || |||| |||| ||||||||||||| |  ||| |||||||||||||    
T  22867069 cacaacgaaggtgttggaagctgcaatgaaggcaaac-taaaggccgcaattaaggcgactaggggcagaccacaat 22866994  T

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