View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_30 (Length: 434)
Name: NF10954A_low_30
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 4 - 433
Target Start/End: Original strand, 8330364 - 8330792
Alignment:
| Q |
4 |
tcaatctaagcaagactgaagaaacagagacagggactaatgactctatgcatcagtggccaatgaaaaatgaccaaagtcactactaagtagacatcca |
103 |
Q |
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| T |
8330364 |
tcaatctaagcaagactgaagaaacagagacagggactaatgattctatgcatcagtgaccaatgaaaaatgaccaaagtcactactaagtagacatcca |
8330463 |
T |
|
| Q |
104 |
ttttctttgtagattttcactataggccaatgacacccaaatgttataaatatataactggtacactattatcttgagattgaacgatataaaataactt |
203 |
Q |
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| T |
8330464 |
ttttctttgtagattttcactataggccaatgacacccaaatgttataaatatataactggtacactattatcttgagattgaacgatataaaataactt |
8330563 |
T |
|
| Q |
204 |
tgtacaaatatgttttgccttgcattcgatcaacttacacaagattattcaaagcacaacatataattaagtattaatactagaaaccagagtaacttct |
303 |
Q |
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| T |
8330564 |
tgtacaaatatgttttgccttgcatttgatcaacttacacaagattattcaaagcacaacatataattaagtattaatactagaaaccagagtaacttct |
8330663 |
T |
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| Q |
304 |
agttgtaacatcatgcaactcatacaaatcttatatacaagtcctgcctgtgtcctgacactgagacaaccataaatccatatgctctatgatcttttgt |
403 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330664 |
agttgt-acatcatgcaactcatacaaatcttatatacaagtcctgcccgtgtcctgacactgagacaaccataaatccatatgctctatgatcttttgt |
8330762 |
T |
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| Q |
404 |
ctaactttgtgaacagcatcaggggatgtg |
433 |
Q |
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| T |
8330763 |
ctaactttgtgaacagcatcaggggatgtg |
8330792 |
T |
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