View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_300 (Length: 262)
Name: NF10954A_low_300
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_300 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 14559915 - 14560142
Alignment:
| Q |
1 |
atcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacctccactgataca |
100 |
Q |
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| T |
14559915 |
atcacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagttgtgtggacctccactgacaca |
14560014 |
T |
|
| Q |
101 |
aaactgtggtggtgaaggagggaaaagcttgtcacaacaaacatatgaaatacgttattatcatgaaaggagtttaattgattggaatttcttaaatgtt |
200 |
Q |
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| T |
14560015 |
aaactgtggtggtgaaggagggaaaagcttgtcacaacaagcatatgaaacacgttattatcatgaaaggagtttaattgattgaaatttcttaagtgtt |
14560114 |
T |
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| Q |
201 |
gaggtgggattcacttttggttttagag |
228 |
Q |
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| T |
14560115 |
gaggtgggattcacttttggttttagag |
14560142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 14569675 - 14569885
Alignment:
| Q |
6 |
ttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacctccactgatacaaaact |
105 |
Q |
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| T |
14569675 |
ttggtgggaaaaataccacctggaacacaaattcaatcatttcaagaagattcacttataggtaataaagagttgtgtggacctccactgacacaaaatt |
14569774 |
T |
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| Q |
106 |
gtggtggtgaaggagggaaaagcttgtcacaacaaacatatgaaatacgttattatcatgaaaggagtttaattgattggaatttcttaaatgttgaggt |
205 |
Q |
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| T |
14569775 |
gtgttggtgaaggagggaaaagcttgtaacaacaagcatatgaaacaccttattttcacgacaggggttcaattgattagaatttcttaagtgttgagtt |
14569874 |
T |
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| Q |
206 |
gggattcactt |
216 |
Q |
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| T |
14569875 |
ggaattcactt |
14569885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 32549283 - 32549371
Alignment:
| Q |
3 |
cacttggtgggaaaaatacaaactggaacacacatttaatcatttcaagaagattcatttataggcaatgaagagctgtgtggacctcc |
91 |
Q |
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| T |
32549283 |
cacttggtgggaagaataccaactgggacacagattcaatcatttcaagcagattcatttattggcaatgaagggctatttggacctcc |
32549371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 32549451 - 32549498
Alignment:
| Q |
177 |
attgattggaatttcttaaatgttgaggtgggattcacttttggtttt |
224 |
Q |
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| T |
32549451 |
attgattggaatttcttgagtgctgagttgggattcacttttggtttt |
32549498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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