View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_303 (Length: 261)
Name: NF10954A_low_303
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_303 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 33063877 - 33064122
Alignment:
| Q |
2 |
caaatgagttttagctcgggacggactaactcttataatcattgacaatggccttctttttatnnnnnnnnnntgctaatatttgaccatactatatact |
101 |
Q |
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| T |
33063877 |
caaatgagttttagctcgggacggactgactcttataatcattgacaatggccttctttttattaaaaaaa--tgctaatatttgacaatactatatact |
33063974 |
T |
|
| Q |
102 |
ctcagtctttctgatgcatgatgatggttatctataccgttttctaaaaacataacatattaaatcattcattctaactgaactgatcttgtacaacagt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063975 |
ctcagtctttctgatgcatgatgatggttatctataccgttttctaaaaacataacatattaaatcattcattctaactgaactgatcttgtacaacagt |
33064074 |
T |
|
| Q |
202 |
tgatcaaataaatgtccgttaaatactgttcatactgggcatgatatt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064075 |
tgatcaaataaatgtccgttaaatactgttcatactgggcatgatatt |
33064122 |
T |
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