View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_304 (Length: 261)
Name: NF10954A_low_304
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_304 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 48439110 - 48438868
Alignment:
| Q |
13 |
gttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgttcnnnnnnnagctttgt |
112 |
Q |
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| T |
48439110 |
gttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgttttttttttagttttgt |
48439011 |
T |
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| Q |
113 |
ataagttactagcaagtgttttcttaatttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattaggtgt |
212 |
Q |
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| T |
48439010 |
ataagttactagcaagtgttttcttaatttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattaggtgt |
48438911 |
T |
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| Q |
213 |
tgacatcaattggaaacttctgtatctgctccattgcagtagg |
255 |
Q |
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| T |
48438910 |
tgacatcaattggaaacttctgtatctgctccattgcagtagg |
48438868 |
T |
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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 21982637 - 21982572
Alignment:
| Q |
19 |
accttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggta |
84 |
Q |
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| T |
21982637 |
accttctttgggaaggctgcacaccttgttgatagcaccaacaatgttggtcacttccaaaaggta |
21982572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 21982307 - 21982262
Alignment:
| Q |
204 |
attaggtgttgacatcaattggaaacttctgtatctgctccattgc |
249 |
Q |
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| T |
21982307 |
attaggtgttgacatccattggtaacttctgtatctgctcaattgc |
21982262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 45199544 - 45199478
Alignment:
| Q |
19 |
accttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtac |
85 |
Q |
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| T |
45199544 |
accttctttggtaaggctgctcatttggtcgacagcactaaccaagttggtcatttccaaaaggtac |
45199478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 3152612 - 3152644
Alignment:
| Q |
9 |
tggagttcataccttctttggaaaggctgctca |
41 |
Q |
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| T |
3152612 |
tggagttcataccttctttggcaaggctgctca |
3152644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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