View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_306 (Length: 260)

Name: NF10954A_low_306
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_306
NF10954A_low_306
[»] scaffold0389 (1 HSPs)
scaffold0389 (147-257)||(5729-5839)
[»] scaffold1418 (1 HSPs)
scaffold1418 (151-258)||(897-1008)
[»] chr7 (5 HSPs)
chr7 (147-248)||(4942457-4942558)
chr7 (173-238)||(5203794-5203859)
chr7 (173-238)||(563750-563815)
chr7 (173-238)||(27970917-27970982)
chr7 (170-238)||(15768226-15768294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (147-247)||(140426-140525)
[»] scaffold0605 (1 HSPs)
scaffold0605 (147-258)||(2729-2840)
[»] chr6 (9 HSPs)
chr6 (147-258)||(28309318-28309429)
chr6 (147-258)||(16585288-16585399)
chr6 (147-258)||(16609981-16610092)
chr6 (142-236)||(27052893-27052991)
chr6 (142-247)||(16640130-16640239)
chr6 (8-48)||(16585512-16585552)
chr6 (8-48)||(16609828-16609868)
chr6 (205-246)||(15647925-15647966)
chr6 (170-238)||(1547997-1548065)
[»] chr4 (2 HSPs)
chr4 (173-239)||(33184739-33184805)
chr4 (142-247)||(26214809-26214918)
[»] chr5 (7 HSPs)
chr5 (147-248)||(33839478-33839579)
chr5 (147-258)||(20382845-20382956)
chr5 (173-238)||(11807986-11808051)
chr5 (173-238)||(12175176-12175241)
chr5 (173-238)||(26083903-26083968)
chr5 (173-235)||(27228166-27228228)
chr5 (8-48)||(20383069-20383109)
[»] chr3 (5 HSPs)
chr3 (142-247)||(10716840-10716949)
chr3 (142-247)||(25269471-25269580)
chr3 (179-228)||(8810422-8810471)
chr3 (179-228)||(21613900-21613949)
chr3 (170-238)||(72890-72958)
[»] chr2 (2 HSPs)
chr2 (142-247)||(3760517-3760626)
chr2 (210-258)||(21119006-21119054)
[»] scaffold0144 (1 HSPs)
scaffold0144 (142-247)||(8636-8745)
[»] scaffold0063 (1 HSPs)
scaffold0063 (204-258)||(6915-6969)
[»] scaffold1767 (1 HSPs)
scaffold1767 (170-223)||(865-918)


Alignment Details
Target: scaffold0389 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 5839 - 5729
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| |||| ||||||||| ||||||||||  ||||||||||    
T  5839 actctatataacaagtgaaactgacaagactggacaagtaagataggaggtggaccgtcatcgcagtgcaaacactcggcaatcttcaacggggataata 5740  T
Q  247 tttttggagat 257  Q
    ||  |||||||    
T  5739 ttactggagat 5729  T

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Target: scaffold1418 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1418
Description:

Target: scaffold1418; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 897 - 1008
Alignment:
Q  151 tatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    ||||||||| ||||||||||| |    |||||||||||||||||||||||||||||  |||| |||| |||||||||  ||||||||| |||||||||||    
T  897 tatataacaggtgaaactgacaaacaagactggacaagtaagataggaggtggaccgtcatcgcagtgcaaacactcgacaatcttcaatggggataata 996  T
Q  247 tttttggagatg 258  Q
    || |||||||||    
T  997 ttattggagatg 1008  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 4942457 - 4942558
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||| |||||||||| ||||| ||||| |||||||||||| | ||||||||  ||||  |||||||||||||| ||||||||||||||||||| ||    
T  4942457 actctatacaacaagtgaagctgacaagactagacaagtaagatggaaggtggactgacattgcagtacaaacactcggcaatcttcattggggatagta 4942556  T
Q  247 tt 248  Q
    ||    
T  4942557 tt 4942558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 5203794 - 5203859
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||| | |||||||||||||| || | ||||| |||||||||||||||||||||||||||||    
T  5203794 agactggataggtaagataggaggttgaacgacatcgcagtacaaacactcagcaatcttcattgg 5203859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 563750 - 563815
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||| | |||||||||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  563750 agactggataggtaagataggaggttgaatgacatcgcagtacaaacactcagcaatcttcattgg 563815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 27970917 - 27970982
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||| | |||||||||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  27970917 agactggataggtaagataggaggttgaatgacatcgcagtacaaacactcagcaatcttcattgg 27970982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 15768226 - 15768294
Alignment:
Q  170 acgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||  |||| ||||||| ||||||||||  ||||| |||||||||||||||| || |||| ||||    
T  15768226 acgagacaagacatgtaagatgggaggtggactgacatcgcagtacaaacactcagaaaacttccttgg 15768294  T

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Target: scaffold0023 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 140426 - 140525
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||||||||||||||||| ||  ||||||||||||||||| |||||||||   ||| ||||||||||||||||| |||||||||||| | ||||||    
T  140426 actctatataacaagtgaaactaacacgactggacaagtaagat-ggaggtggaatgacaacacagtacaaacactcatcaatcttcattgagaataata 140524  T

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Target: scaffold0605 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 2729 - 2840
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||||||||||||||||| || |||||||| | |||| || |||||||||||  |||| || ||||||||||| ||||||||||||||||| || |    
T  2729 actctatataacaagtgaaactaacaagactggataggtaaaatgggaggtggaccgtcatcgcattacaaacactcggcaatcttcattggggagaaaa 2828  T
Q  247 tttttggagatg 258  Q
    ||  ||||||||    
T  2829 ttactggagatg 2840  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 28309429 - 28309318
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||| |||||||||| ||||| ||||| |||||||||||| | ||| ||||  ||||| ||||||||||||||  |||||||||||||||||| ||    
T  28309429 actctatacaacaagtgaagctgacaagactagacaagtaagatggaaggcggactgacatcgcagtacaaacactcgacaatcttcattggggatagta 28309330  T
Q  247 tttttggagatg 258  Q
    ||  ||||||||    
T  28309329 ttactggagatg 28309318  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 16585399 - 16585288
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||| |||||||||| ||||  ||||| |||||||||||| | ||| ||||  ||||| ||||||||||||||  |||||||||||||||||| ||    
T  16585399 actctatacaacaagtgaagctgataagactagacaagtaagatggaaggcggactgacatcgcagtacaaacactcgacaatcttcattggggatagta 16585300  T
Q  247 tttttggagatg 258  Q
    ||  ||||||||    
T  16585299 ttactggagatg 16585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 16609981 - 16610092
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||| |||||||||| ||||  ||||| |||||||||||| | ||| ||||  ||||| ||||||||||||||  |||||||||||||||||| ||    
T  16609981 actctatacaacaagtgaagctgataagactagacaagtaagatggaaggcggactgacatcgcagtacaaacactcgacaatcttcattggggatagta 16610080  T
Q  247 tttttggagatg 258  Q
    ||  ||||||||    
T  16610081 ttactggagatg 16610092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 27052893 - 27052991
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcatt 236  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | |||||||||||||||||||||||||||||||||    
T  27052893 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcacagtacaaacactcagcaatcttcatt 27052991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 16640239 - 16640130
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattg 237  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | ||||| |||||||||||||| |||||||||||||    
T  16640239 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcgcagtacaaacactccgcaatcttcattg 16640140  T
Q  238 gggataatat 247  Q
    |  |||||||    
T  16640139 gaaataatat 16640130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 16585552 - 16585512
Alignment:
Q  8 aagacacgaggcagtcaatgcaatcatgtataaatggtatt 48  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  16585552 aagacacaaggcagtcaatgcaatcatgtataaatggtatt 16585512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 16609828 - 16609868
Alignment:
Q  8 aagacacgaggcagtcaatgcaatcatgtataaatggtatt 48  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  16609828 aagacacaaggcagtcaatgcaatcatgtataaatggtatt 16609868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 15647925 - 15647966
Alignment:
Q  205 catcacagtacaaacactcagcaatcttcattggggataata 246  Q
    ||||||||||||||||||| || |||| ||||||||||||||    
T  15647925 catcacagtacaaacactccgccatctacattggggataata 15647966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 1548065 - 1547997
Alignment:
Q  170 acgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||  |||| ||||||| ||||||||||  ||||| |||||||||||||||| || |||| ||||    
T  1548065 acgagacaagacatgtaagatgggaggtggactgacatcgcagtacaaacactcagaaaacttccttgg 1547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 33184805 - 33184739
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggg 239  Q
    |||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  33184805 agactggaaaggtaagataggaagtggtccaacatcacagtacaaacactcagcaatcttcattggg 33184739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 26214809 - 26214918
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattg 237  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | ||||| ||||||||||||||||||||||||||||    
T  26214809 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcgcagtacaaacactcagcaatcttcattg 26214908  T
Q  238 gggataatat 247  Q
    |  |||||||    
T  26214909 gaaataatat 26214918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 33839478 - 33839579
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||| |||||||||| ||||| ||||| |||||||||||| | ||| ||||  ||||| ||||||||||||||  |||||||||||||||||| ||    
T  33839478 actctatacaacaagtgaagctgacaagactagacaagtaagatggaaggcggactgacatcgcagtacaaacactcgacaatcttcattggggatagta 33839577  T
Q  247 tt 248  Q
    ||    
T  33839578 tt 33839579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 20382956 - 20382845
Alignment:
Q  147 actctatataacaagtgaaactgacgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattggggataata 246  Q
    |||||||| |||||||||| ||| | ||||| |||||||||||| | ||| ||||  ||||| ||||||||||||||  |||||||||||||||||| ||    
T  20382956 actctatacaacaagtgaagctgtcaagactagacaagtaagatggaaggcggactgacatcgcagtacaaacactcgacaatcttcattggggatagta 20382857  T
Q  247 tttttggagatg 258  Q
    ||  ||||||||    
T  20382856 ttactggagatg 20382845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 11807986 - 11808051
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||| | |||||||||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  11807986 agactggataggtaagataggaggttgaatgacatcgcagtacaaacactcagcaatcttcattgg 11808051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 12175176 - 12175241
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||| | |||||||||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  12175176 agactggataggtaagataggaggttgaatgacatcgcagtacaaacactcagcaatcttcattgg 12175241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 26083903 - 26083968
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||| | |||||||||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  26083903 agactggataggtaagataggaggttgaatgacatcgcagtacaaacactcagcaatcttcattgg 26083968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 27228166 - 27228228
Alignment:
Q  173 agactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcat 235  Q
    |||||||| | |||||||||||||| |  | ||||| ||||||||||||||||||||||||||    
T  27228166 agactggataggtaagataggaggttggacgacatcgcagtacaaacactcagcaatcttcat 27228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 20383109 - 20383069
Alignment:
Q  8 aagacacgaggcagtcaatgcaatcatgtataaatggtatt 48  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  20383109 aagacacaaggtagtcaatgcaatcatgtataaatggtatt 20383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 10716840 - 10716949
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattg 237  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | ||||| ||||||||||||||||||||||||||||    
T  10716840 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcgcagtacaaacactcagcaatcttcattg 10716939  T
Q  238 gggataatat 247  Q
    |  |||||||    
T  10716940 gaaataatat 10716949  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 25269580 - 25269471
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattg 237  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | ||||||||||||||||||||| ||||||||||||    
T  25269580 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcacagtacaaacactcaacaatcttcattg 25269481  T
Q  238 gggataatat 247  Q
    |  |||||||    
T  25269480 gaaataatat 25269471  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 8810471 - 8810422
Alignment:
Q  179 gacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaa 228  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||| ||||    
T  8810471 gacaggtaagatgggaggtggactaacatcgcagtacaaacactcggcaa 8810422  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 21613949 - 21613900
Alignment:
Q  179 gacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaa 228  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||| ||||    
T  21613949 gacaggtaagatgggaggtggactaacatcgcagtacaaacactcggcaa 21613900  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 72958 - 72890
Alignment:
Q  170 acgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattgg 238  Q
    |||||||  |||||||||||| ||||  ||||  |||||||||||||||||||| |||| |||| ||||    
T  72958 acgagacaagacaagtaagatgggagacggactgacatcacagtacaaacactcggcaaacttccttgg 72890  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 3760517 - 3760626
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattg 237  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | ||||||||||||||||||||| ||||||||||||    
T  3760517 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcacagtacaaacactcaacaatcttcattg 3760616  T
Q  238 gggataatat 247  Q
    |  |||||||    
T  3760617 gaaataatat 3760626  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 21119054 - 21119006
Alignment:
Q  210 cagtacaaacactcagcaatcttcattggggataatatttttggagatg 258  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||    
T  21119054 cagtacaaacactcagcaatcttcattgggaataatatcattggagatg 21119006  T

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Target: scaffold0144 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 8745 - 8636
Alignment:
Q  142 gtataactctatataacaagtgaaactgacga----gactggacaagtaagataggaggtggaccaacatcacagtacaaacactcagcaatcttcattg 237  Q
    |||| ||| ||||||||| ||||||||||| |    ||||||| | |||||||||||||| || | ||||| |||||||||||||| |||||||||||||    
T  8745 gtatgactgtatataacaggtgaaactgacaaacaagactggataggtaagataggaggttgaacgacatcgcagtacaaacactccgcaatcttcattg 8646  T
Q  238 gggataatat 247  Q
    |  |||||||    
T  8645 gaaataatat 8636  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 6969 - 6915
Alignment:
Q  204 acatcacagtacaaacactcagcaatcttcattggggataatatttttggagatg 258  Q
    ||||| |||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  6969 acatcgcagtacaatcactcgacaatcttcattggggataatatctttggagatg 6915  T

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Target: scaffold1767 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1767
Description:

Target: scaffold1767; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 918 - 865
Alignment:
Q  170 acgagactggacaagtaagataggaggtggaccaacatcacagtacaaacactc 223  Q
    |||||||  |||| ||||||| |||||||||| |||||| ||||||||||||||    
T  918 acgagacaagacaggtaagatgggaggtggactaacatcgcagtacaaacactc 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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