View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_310 (Length: 258)
Name: NF10954A_low_310
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_310 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 48484166 - 48484413
Alignment:
| Q |
12 |
gatggacatcatga-cgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttg |
110 |
Q |
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| T |
48484166 |
gatggaaatcatgaacgatgattatagcacctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttg |
48484265 |
T |
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| Q |
111 |
tccattttgcataaactggttcatatttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacatgagac |
210 |
Q |
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| T |
48484266 |
tccattttgcataaactggttcatatttttctgaggcaataaagtaaaagtaaactaagtttctccatttcaaaaatgtatttgaaagagaacataagac |
48484365 |
T |
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| Q |
211 |
tgaaatgcaccataagacctgatcatgtacaagaaatggaagtttcag |
258 |
Q |
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| T |
48484366 |
tgaaatgtaccataagacctgatcatgtacaagaaatggaagtttcag |
48484413 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 10036419 - 10036323
Alignment:
| Q |
39 |
acctgttacatataataatcttgttatcttcccaatcttctacccatctgcaaatcgcacatctctctgttgtccattttgcataaactggttcata |
135 |
Q |
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| T |
10036419 |
acctgttgcagatgataattttgttatcctcatagtcttcgatccatctacaaatagcacatctttctgtcgtccattttgcatgaactggctcata |
10036323 |
T |
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