View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_313 (Length: 258)
Name: NF10954A_low_313
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_313 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 3877559 - 3877803
Alignment:
| Q |
1 |
tataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgtaattaatgaatgagtttaatggaaatatggttcatgattg |
100 |
Q |
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| T |
3877559 |
tataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtgcttgaaattaatga----gttgaaccgaaatatggtttatgatta |
3877654 |
T |
|
| Q |
101 |
aacatggtaacataagccgaccccatttaatacgaaaatgtttgattcggtaactagtccatgaacggacaaatcggggttcaatctcatcaatcatttg |
200 |
Q |
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| T |
3877655 |
aacatggtaacataagccgaccccatttaatacgaaaatgtttgattcggtatctagtccatgaaccgacatatcggggttcaatctcatcgatcatttg |
3877754 |
T |
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| Q |
201 |
ccggacccatttaaagttaaaagaagaacatgagaagagggagtataat |
249 |
Q |
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| T |
3877755 |
ccggacccatttaaagttaaaagaagaacatgagaagagggagtataat |
3877803 |
T |
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