View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_314 (Length: 258)
Name: NF10954A_low_314
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_314 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 406552 - 406796
Alignment:
| Q |
13 |
atatccagcataacagggttaaaaagttcaaaagaaaaacatgtgttgaaggagatgcatgcatcacattcacgcaaacacaaacctacccaaagacaat |
112 |
Q |
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| T |
406552 |
atatccagcataacagggttaaaaagttcaaaagaaaaacatgtgttgaaggagatgcatgcatcacattcacgcaaacacaaacatacccaaagacaat |
406651 |
T |
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| Q |
113 |
aaataaaaagggacggaccttttctgcaagtgcaccaagaagacgaatgtcaataggaagaggtttctcatcatgttccatgaactcagcctaaagatac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
406652 |
aaataaaaagggacggaccttttctgcaagtgcaccaagaagacgaatgtcaataggaagaggtttctcatcatgttccatgaactcagcctaaagatac |
406751 |
T |
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| Q |
213 |
aagtaacaaaagcaggtgagtgtaaattccgaaagtagaaaattg |
257 |
Q |
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| T |
406752 |
aagtaacaaaagcaggtgagtgtaaattccgaaagtagaaaattg |
406796 |
T |
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