View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_32 (Length: 433)

Name: NF10954A_low_32
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_32
NF10954A_low_32
[»] chr6 (3 HSPs)
chr6 (25-418)||(663602-664000)
chr6 (186-414)||(908100-908328)
chr6 (188-232)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (81-144)||(44172881-44172944)
chr7 (77-151)||(36314611-36314685)
chr7 (61-127)||(38134414-38134480)
chr7 (187-235)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (187-238)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (65-138)||(16315862-16315935)
chr5 (90-138)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (76-144)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (76-138)||(18513238-18513300)
chr4 (68-117)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (62-127)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (67-144)||(43328458-43328535)
chr1 (190-238)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 25 - 418
Target Start/End: Complemental strand, 664000 - 663602
Alignment:
Q  25 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  125 tgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 219  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  220 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattttatatacgaacagttttta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  663800 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatatatgaacaattttta 663701  T
Q  320 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663700 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 663602  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 186 - 414
Target Start/End: Original strand, 908100 - 908328
Alignment:
Q  186 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 285  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  286 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 385  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  386 tggagttcgcataataatgcagtttttga 414  Q
    ||||||| |||||||||||||||||||||    
T  908300 tggagtttgcataataatgcagtttttga 908328  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  188 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 232  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  81 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 144  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  77 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac 151  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| ||||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  61 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 127  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  187 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 235  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  187 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 238  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
Q  65 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 138  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || ||||||||||||||| |  |||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt 16315935  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  90 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 138  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
Q  76 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 144  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| |||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  76 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 138  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  68 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 117  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  62 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 127  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  67 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 144  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  190 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 238  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

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