View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_320 (Length: 257)
Name: NF10954A_low_320
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_320 |
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| [»] scaffold0649 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 2442696 - 2442888
Alignment:
| Q |
24 |
gaccgaactctagcttctctttttgcaaccattttcagactatcttgctctgcatgcgatagaatgatacaaaatttccagaattgcattgtaaaatggt |
123 |
Q |
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| T |
2442696 |
gaccgaactctagcttctctttttgcaaccattttcagactatcttgctctgcgtgcgatagaatgatacaaaatttgtataaattgattgtaaaatggt |
2442795 |
T |
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| Q |
124 |
aatatagaggagccctcgatcaatttctggtaaacagtgtcagtgagatgaacttgaaacaaaaacaaggttaacaaactcatatacaaatat |
216 |
Q |
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| T |
2442796 |
aatataaagaagccctcgatcaatttctggtaaacagtgttagtgtgatgaacttgaaacaaaaacaaggttaacaaactcatatacaaatat |
2442888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 50984328 - 50984196
Alignment:
| Q |
61 |
gactatcttgctctgcatgcgatagaatgatacaaaatttccagaattgcattgtaaaatggtaatatagaggagccctcgatcaatttctggtaa--ac |
158 |
Q |
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| T |
50984328 |
gactatcttgctctgcatgtgacagattaaaacaaaatttgtagaattg-attg-aaaatggtaatatagagaagccctcaatcaatttctagaaaacac |
50984231 |
T |
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| Q |
159 |
agtgtcagtgagatgaacttgaaacaaaaacaagg |
193 |
Q |
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| T |
50984230 |
agtttcagtgagatgaagttgaaacaaaatcaagg |
50984196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 2121 - 2165
Alignment:
| Q |
213 |
atatccttccacatcacttaatcccttgtcccccagaacacttga |
257 |
Q |
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| T |
2121 |
atattcttccacatcacttaatcccttgtcccccataacacttga |
2165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 34019952 - 34019916
Alignment:
| Q |
37 |
cttctctttttgcaaccattttcagactatcttgctc |
73 |
Q |
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| T |
34019952 |
cttctctttttgcaaccattttcagactatcttgctc |
34019916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 15814856 - 15814893
Alignment:
| Q |
220 |
tccacatcacttaatcccttgtcccccagaacacttga |
257 |
Q |
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| T |
15814856 |
tccacatcacttaatcccttgtcccccacaacacttga |
15814893 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 11384946 - 11384905
Alignment:
| Q |
213 |
atatccttccacatcacttaatcccttgtcccccagaacact |
254 |
Q |
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| T |
11384946 |
atattcttccacatcacttaatcccttctcccccacaacact |
11384905 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 21794389 - 21794430
Alignment:
| Q |
213 |
atatccttccacatcacttaatcccttgtcccccagaacact |
254 |
Q |
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| T |
21794389 |
atattcttccacatcacttaatcccttctcccccacaacact |
21794430 |
T |
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