View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_322 (Length: 257)
Name: NF10954A_low_322
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_322 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 20489641 - 20489885
Alignment:
| Q |
1 |
atatttcaaattccaaccactggcagattcaagtaattagctgtaagagtagaaatatagattagtataattaatgttaatagatagaaaatgtcttggc |
100 |
Q |
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| T |
20489641 |
atatttcaatttccaaccactggcagattcaagtaattagctgtaatagtagaaatatagattagtataattaatattaatagatagaaaatgtcttgtc |
20489740 |
T |
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| Q |
101 |
atgtaaatcttcaaatttttctttaagtatcatcaaggaaggtacgtcatatgtcatgaagtcccaccaatggagcaaaggataatggtagagtagcctt |
200 |
Q |
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| T |
20489741 |
atgtaaatcttcaaatttttctttaagtaaaatcaaggaag----gtcatatgtcatgaagtcccaccaatggagcaaaggataatggtagagtagcctt |
20489836 |
T |
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| Q |
201 |
ttccagtgcaaacaactttaagaactacacatgcatacttagtataatc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20489837 |
ttccagtgcaaacaactttaagaactacacatgcatacttagtataatc |
20489885 |
T |
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