View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_323 (Length: 256)
Name: NF10954A_low_323
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_323 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 41760490 - 41760655
Alignment:
| Q |
16 |
atgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaatatattgaaaatataattttcatagacgaagaacaaggagaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41760490 |
atgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcatagacgaagaacaaggagaaga |
41760589 |
T |
|
| Q |
116 |
agttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaat |
181 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41760590 |
agttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaat |
41760655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 41795385 - 41795456
Alignment:
| Q |
110 |
agaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaat |
181 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
41795385 |
agaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaat |
41795456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University