View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_325 (Length: 256)
Name: NF10954A_low_325
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_325 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 48779790 - 48780044
Alignment:
| Q |
1 |
aatatggaagcatatataacaaaatttagaatcttcatgcaaagaatattaagaggatgagggaaacatttgctaatttctagttcacgaatgtcaacag |
100 |
Q |
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| T |
48779790 |
aatatggaagcatatataacaaaatttagaatcttcatgcaaagaatattaagaggatgagggaaacatttgctaatttctagttcacgaatgtcaacag |
48779889 |
T |
|
| Q |
101 |
ttgtatttcttaatctgataatttgtgtaaaagtatcgacaaatagagccaagcggctacctgcaatctgtgactagaacgcaaagctaaagctgaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48779890 |
ttgtatttcttaatctgataatttgtgtaaaagtatcgacaaatagagccaagcggctacttgcaatctgtgactagaacgcaaagctaaagctgaaata |
48779989 |
T |
|
| Q |
201 |
atgtctatagtaaatatgtgaacttcaggcttcactgccatccgaagaagcattg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48779990 |
atgtctatagtaaatatgtgaacttcaggcttcactgccatccgaagaagcattg |
48780044 |
T |
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