View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_326 (Length: 256)
Name: NF10954A_low_326
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_326 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 79200 - 78985
Alignment:
| Q |
24 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
123 |
Q |
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| T |
79200 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
79101 |
T |
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| Q |
124 |
tagagttccatatccacctgcataagttaattcagaaaatttaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
223 |
Q |
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| T |
79100 |
cagagttccatatccccctgcataagttaattcagaaaattcaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
79001 |
T |
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| Q |
224 |
gttttttaggtctatg |
239 |
Q |
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|||||||||||||||| |
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| T |
79000 |
gttttttaggtctatg |
78985 |
T |
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Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 40887084 - 40887299
Alignment:
| Q |
24 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40887084 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
40887183 |
T |
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| Q |
124 |
tagagttccatatccacctgcataagttaattcagaaaatttaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
223 |
Q |
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| T |
40887184 |
cagagttccatatccccctgcataagttaattcagaaaattcaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
40887283 |
T |
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| Q |
224 |
gttttttaggtctatg |
239 |
Q |
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| T |
40887284 |
gttttttaggtctatg |
40887299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 28269615 - 28269696
Alignment:
| Q |
65 |
attaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacctgcat |
146 |
Q |
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| T |
28269615 |
attaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtcccataaccacctgcat |
28269696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 21627898 - 21627833
Alignment:
| Q |
77 |
tcatgaattccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacct |
142 |
Q |
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| T |
21627898 |
tcatggatgccaagctgagcccaagttatgacctcaagaagttcctcaagtgtcccatagccacct |
21627833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 40461699 - 40461775
Alignment:
| Q |
66 |
ttaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacct |
142 |
Q |
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| T |
40461699 |
ttaccggtttatcatggatgccaagttgagcccatgttatcacctcaaggagctcctcaagtgtcccatacccacct |
40461775 |
T |
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