View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_327 (Length: 255)
Name: NF10954A_low_327
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_327 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 41311027 - 41311269
Alignment:
| Q |
13 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
|
| Q |
113 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
|
| Q |
213 |
aatcagccaatgaatagaaccattcaagaacgacccaactctg |
255 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41311227 |
aaccagccaatgaatagaaccattcaagaacgacccaactctg |
41311269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 43164710 - 43164947
Alignment:
| Q |
18 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
117 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
118 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
217 |
Q |
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|||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| || |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
|
| Q |
218 |
gccaatgaatagaaccattcaagaacgacccaactctg |
255 |
Q |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
43164910 |
gccaatgaatagaaccattcaagaacgacccgactctg |
43164947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 30165883 - 30165658
Alignment:
| Q |
18 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
|
| Q |
118 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
217 |
Q |
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||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
|
| Q |
218 |
gccaatgaatagaaccattcaagaacgacccaactctg |
255 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
30165695 |
gccaatgaatagaaccattgaagaacgacccaactctg |
30165658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 30124981 - 30125223
Alignment:
| Q |
13 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
112 |
Q |
| |
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|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
|
| Q |
113 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
212 |
Q |
| |
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||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| | | |||| || || || |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg |
30125180 |
T |
|
| Q |
213 |
aatcagccaatgaatagaaccattcaagaacgacccaactctg |
255 |
Q |
| |
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|| |||||||||||||| |||||||||||| ||||||||||| |
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| T |
30125181 |
aaccagccaatgaatagtcccattcaagaacaacccaactctg |
30125223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
| Q |
116 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat |
215 |
Q |
| |
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|||| ||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||| | |||| |||| || || ||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac |
28181064 |
T |
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| Q |
216 |
cagccaatgaatagaa |
231 |
Q |
| |
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|||||||||||||||| |
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| T |
28181065 |
cagccaatgaatagaa |
28181080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 30131068 - 30131177
Alignment:
| Q |
146 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga |
245 |
Q |
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||||||||| ||||||||||||||||| |||||| |||||||||||| || |||| || || ||||| |||||||||||||| |||||||||||| | |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaa |
30131167 |
T |
|
| Q |
246 |
cccaactctg |
255 |
Q |
| |
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||| |||||| |
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| T |
30131168 |
cccgactctg |
30131177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 30120068 - 30120174
Alignment:
| Q |
146 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga |
245 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||| ||| | |||| || || || || || ||||||||||| |||||||||||| | |
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| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaa |
30120167 |
T |
|
| Q |
246 |
cccaact |
252 |
Q |
| |
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||||||| |
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| T |
30120168 |
cccaact |
30120174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
15 |
tgtgtattcttgcatcacccatatcttaagtgta |
48 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 21426703 - 21426579
Alignment:
| Q |
131 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaataga |
230 |
Q |
| |
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||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| | |||| | || || || |||||||||||||| |
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| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagc |
21426604 |
T |
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| Q |
231 |
accattcaagaacgacccaactctg |
255 |
Q |
| |
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||||| ||||||||||| |||||| |
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| T |
21426603 |
cccatttaagaacgacccgactctg |
21426579 |
T |
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Back To:
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