View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_33 (Length: 433)
Name: NF10954A_low_33
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_33 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 43357557 - 43357137
Alignment:
| Q |
9 |
accacagaggtcaaatatagtaaaacagcagtgtcatggggccataataacaaacacttcaaaagaaggatgcgaccttactcaaatttccaaaaccagg |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43357557 |
accacagaagtcaaatatagtaaaacagcagtgtcatggggccataataaca----cttcaaaagaaggatgcgaccttactcaaatttccaaaaccagg |
43357462 |
T |
|
| Q |
109 |
gtccaattgaattattatcataattacctcataacttttgctttctacgttttcttcgttttataacggtcctcattatgacatttcaggaccagtactg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43357461 |
gtccaattgaattattatcataattacctcataacttttgctttctacgttttcttcgttttataacggtcctcattatgacatttcaggaccagtactg |
43357362 |
T |
|
| Q |
209 |
cactcaatcctcgtatatataaacacctttgtgtaatgttcctcctcattcaacatcaacaatggatgtcagagaaaactcaaaggaactgcagcaactg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43357361 |
cactcaatcctcgtatatataaacacctttgtgtaatgttcctcctcattcaacatcaacaatggatgtcagagaaaactcaaaggaactgcagcaactg |
43357262 |
T |
|
| Q |
309 |
caaacctttgctaaacaagaacaatgcaacatctaccccatgaatttcaatgtgctagagaatacaaaaggcaacactaacagatgtaattctgcattct |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43357261 |
caaacctttgctaaacaagaacaatacaacatctaccccatgaatttcaatgtgctagagaatacaaaaggcaacactaacagatgtaattctgtattct |
43357162 |
T |
|
| Q |
409 |
ttgtaccaggtgaaggatattctga |
433 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
43357161 |
ttgtaccaggtgaaggatattctga |
43357137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University