View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_330 (Length: 255)

Name: NF10954A_low_330
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_330
NF10954A_low_330
[»] chr5 (2 HSPs)
chr5 (7-175)||(41222154-41222322)
chr5 (173-243)||(41222675-41222747)
[»] chr8 (1 HSPs)
chr8 (28-157)||(13375861-13375997)
[»] chr6 (3 HSPs)
chr6 (28-157)||(16985223-16985359)
chr6 (103-140)||(16795006-16795043)
chr6 (28-88)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (28-94)||(38942998-38943064)
chr3 (28-139)||(7055522-7055640)
chr3 (28-94)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (28-68)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 41222154 - 41222322
Alignment:
Q  7 ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgctagcttt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  41222154 ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttcgaaagataaggtcgctagattt 41222253  T
Q  107 cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222254 cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 41222322  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 41222675 - 41222747
Alignment:
Q  173 caattaatgtaatgtaaatttattgtgacacg--atatatatcttaaatatatggtcactttataaaaatatt 243  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||||||    
T  41222675 caattaatgtaatgtaaatttattgtaacacgatatatatatcttaaatatatggtcacttcataaaaatatt 41222747  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 13375997 - 13375861
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgcta-------gctttcagcaactccgaaa 120  Q
    |||| ||||||| ||||||||||||| ||||||||  |||| | ||||||| |||||| ||| ||||||| |||       |||||||||||||||||||    
T  13375997 tgccagactggttgggtgccatgactactcttcaaagattaaaaatcagtgggtttccgaagttaaggtcactaccagacagctttcagcaactccgaaa 13375898  T
Q  121 catgcaaaagttaagtattgttaatttctctatgttg 157  Q
    | |||||| |||||||||||||| || ||||||||||    
T  13375897 cttgcaaaggttaagtattgttagttgctctatgttg 13375861  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 16985359 - 16985223
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaaa 120  Q
    |||| ||||| | |||||||||||||||||||||||||||| | |||| ||| ||||||||| |||| || ||       ||||||||||||||||||||    
T  16985359 tgccagactgtttgggtgccatgacttctcttcaagaattatacatcattgactttccaaagttaagttcactaccagacagctttcagcaactccgaaa 16985260  T
Q  121 catgcaaaagttaagtattgttaatttctctatgttg 157  Q
      |||||||||||| |||| || ||| | ||||||||    
T  16985259 tttgcaaaagttaattattattgattgccctatgttg 16985223  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 16795043 - 16795006
Alignment:
Q  103 ctttcagcaactccgaaacatgcaaaagttaagtattg 140  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  16795043 ctttcagcaactccgaaacttgcaagagttaagtattg 16795006  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 16779091 - 16779031
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaa 88  Q
    |||| ||||| | ||||||||||||||||||||||| |||| | |||  ||||||||||||    
T  16779091 tgccagactgtttgggtgccatgacttctcttcaagtattagacatctatgagtttccaaa 16779031  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 38943064 - 38942998
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag 94  Q
    |||||||||||| ||||||||||||||||||||||  |||||| ||||||| |||||| ||| ||||    
T  38943064 tgccggactggttgggtgccatgacttctcttcaaagattacaaatcagtgggtttccgaagttaag 38942998  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 7055522 - 7055640
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaaa 120  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||  |  |||||| | | ||||||||||       ||| |||||||||||| |||    
T  7055522 tgccggactggttgggtgccatgacttctcttcaagtattacaaatctctaggtttccgatgttaaggtcgctaccagacagcattcagcaactccaaaa 7055621  T
Q  121 catgcaaaagttaagtatt 139  Q
    | | |||||||||||||||    
T  7055622 cttacaaaagttaagtatt 7055640  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 38941597 - 38941663
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag 94  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||  | ||||||||||| ||||    
T  38941597 tgccagactggttgggtgccatgacttctcttcaagtattacacatccttaagtttccaaagttaag 38941663  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 6415 - 6375
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaatta 68  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  6415 tgccggactggttgggtgccatgacttctcttcaagtatta 6375  T

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