View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_335 (Length: 253)

Name: NF10954A_low_335
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_335
NF10954A_low_335
[»] scaffold0676 (1 HSPs)
scaffold0676 (4-253)||(1832-2081)
[»] scaffold0004 (2 HSPs)
scaffold0004 (4-253)||(8643-8892)
scaffold0004 (157-242)||(2107-2192)
[»] scaffold0863 (1 HSPs)
scaffold0863 (6-245)||(4276-4515)
[»] scaffold0594 (1 HSPs)
scaffold0594 (4-253)||(3884-4133)
[»] chr7 (9 HSPs)
chr7 (39-242)||(13131215-13131418)
chr7 (63-111)||(2712654-2712702)
chr7 (63-111)||(8009110-8009158)
chr7 (63-111)||(9089048-9089096)
chr7 (63-111)||(11009000-11009048)
chr7 (63-111)||(24737916-24737964)
chr7 (63-111)||(26397137-26397185)
chr7 (63-111)||(26692782-26692830)
chr7 (63-111)||(40049145-40049193)
[»] scaffold0193 (1 HSPs)
scaffold0193 (8-245)||(6589-6825)
[»] chr8 (12 HSPs)
chr8 (4-239)||(20378538-20378772)
chr8 (4-253)||(17263145-17263394)
chr8 (4-242)||(24648689-24648927)
chr8 (55-126)||(22526816-22526887)
chr8 (63-111)||(245642-245690)
chr8 (63-111)||(808762-808810)
chr8 (63-111)||(3355626-3355674)
chr8 (63-111)||(9344933-9344981)
chr8 (63-111)||(13695561-13695609)
chr8 (63-111)||(29080225-29080273)
chr8 (63-111)||(36296756-36296804)
chr8 (63-111)||(44484947-44484995)
[»] chr5 (21 HSPs)
chr5 (1-245)||(92758-93001)
chr5 (4-233)||(23434130-23434359)
chr5 (4-233)||(23445497-23445726)
chr5 (157-239)||(21613496-21613578)
chr5 (63-111)||(6982886-6982934)
chr5 (63-111)||(9343034-9343082)
chr5 (63-111)||(14037121-14037169)
chr5 (63-111)||(14561787-14561835)
chr5 (63-111)||(22683197-22683245)
chr5 (63-111)||(23303358-23303406)
chr5 (63-111)||(23369015-23369063)
chr5 (63-111)||(23703859-23703907)
chr5 (63-111)||(24574152-24574200)
chr5 (63-111)||(24591795-24591843)
chr5 (63-111)||(24814993-24815041)
chr5 (63-111)||(24820609-24820657)
chr5 (63-111)||(27467241-27467289)
chr5 (63-111)||(30231160-30231208)
chr5 (63-111)||(36586249-36586297)
chr5 (63-111)||(39494619-39494667)
chr5 (63-111)||(42049859-42049907)
[»] scaffold0379 (1 HSPs)
scaffold0379 (4-245)||(1358-1599)
[»] scaffold0396 (1 HSPs)
scaffold0396 (4-172)||(10443-10611)
[»] scaffold0084 (1 HSPs)
scaffold0084 (1-245)||(41610-41854)
[»] scaffold0810 (1 HSPs)
scaffold0810 (4-242)||(718-956)
[»] chr1 (6 HSPs)
chr1 (13-233)||(36137794-36138014)
chr1 (63-111)||(7511047-7511095)
chr1 (14-74)||(22461035-22461095)
chr1 (63-111)||(36243433-36243481)
chr1 (63-111)||(38098860-38098908)
chr1 (63-111)||(51652877-51652925)
[»] chr3 (22 HSPs)
chr3 (159-245)||(12954746-12954832)
chr3 (157-238)||(17220164-17220245)
chr3 (4-107)||(17251696-17251799)
chr3 (13-106)||(18137942-18138035)
chr3 (157-243)||(18137805-18137891)
chr3 (63-111)||(4747551-4747599)
chr3 (63-111)||(5543977-5544025)
chr3 (63-111)||(5872657-5872705)
chr3 (63-111)||(11279356-11279404)
chr3 (63-111)||(12244514-12244562)
chr3 (63-111)||(12293146-12293194)
chr3 (1-41)||(12954902-12954942)
chr3 (63-111)||(13125522-13125570)
chr3 (63-111)||(14469452-14469500)
chr3 (63-111)||(16426115-16426163)
chr3 (63-111)||(23761129-23761177)
chr3 (63-111)||(24390475-24390523)
chr3 (63-111)||(24663702-24663750)
chr3 (63-111)||(28321194-28321242)
chr3 (63-111)||(38198603-38198651)
chr3 (63-111)||(39375917-39375965)
chr3 (63-111)||(41687481-41687529)
[»] chr2 (8 HSPs)
chr2 (1-245)||(18941607-18941852)
chr2 (63-111)||(9769737-9769785)
chr2 (63-111)||(9904547-9904595)
chr2 (63-111)||(10270774-10270822)
chr2 (63-111)||(11402150-11402198)
chr2 (63-111)||(27225218-27225266)
chr2 (63-111)||(39177072-39177120)
chr2 (63-111)||(43349191-43349239)
[»] scaffold0203 (1 HSPs)
scaffold0203 (186-245)||(23626-23685)
[»] scaffold0217 (1 HSPs)
scaffold0217 (16-239)||(10523-10746)
[»] scaffold0324 (1 HSPs)
scaffold0324 (187-245)||(11518-11576)
[»] scaffold0133 (1 HSPs)
scaffold0133 (63-111)||(34948-34996)
[»] scaffold0105 (1 HSPs)
scaffold0105 (63-111)||(43951-43999)
[»] chr6 (8 HSPs)
chr6 (63-111)||(3665214-3665262)
chr6 (63-111)||(12723804-12723852)
chr6 (63-111)||(16952793-16952841)
chr6 (63-111)||(25791502-25791550)
chr6 (63-111)||(26029207-26029255)
chr6 (63-111)||(26868590-26868638)
chr6 (63-111)||(27376580-27376628)
chr6 (63-111)||(27466937-27466985)
[»] chr4 (5 HSPs)
chr4 (63-111)||(454411-454459)
chr4 (63-111)||(10747558-10747606)
chr4 (63-111)||(10961327-10961375)
chr4 (63-111)||(27660459-27660507)
chr4 (63-111)||(36022137-36022185)


Alignment Details
Target: scaffold0676 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 1832 - 2081
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 1931  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1932 tcagaatcttctctgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 2031  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2032 caacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 8892 - 8643
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    |||||||||| |||||  ||||||| |||||||||||||||||||  |||||||||||| ||||||||||| |  || |||||||||||||| |||||||    
T  8892 atgaaaacagaaatgcttatgatgcttgacctgatttcagtgcatacaaatggttctaaccccatttcttcacgagattttccctccatagttggatcaa 8793  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    |||||||||||| |||||| || | | || || ||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  8792 tcagaatcttctctgtttcttctaaccttgcatcattcttgtcataaacatgtgctctaacccagaagtgcctcacaagtgtcttgtatgttggaccatt 8693  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 253  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8692 caacatcttgaagtattccatgagaccttatgcttcgtagtatcctctga 8643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 2107 - 2192
Alignment:
Q  157 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgta 242  Q
    ||||| |||||||| ||||||| ||| |||||||||||| ||||||| ||||| ||||| || |||||||||||||| ||||||||    
T  2107 gctcttacccagaactgcctaataagagtcttgtatgttagaccatttaacatattgaactaatccatgagaccttgagcttcgta 2192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 4515 - 4276
Alignment:
Q  6 gaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatc 105  Q
    |||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||| |||||||||||||    
T  4515 gaaaacaggaatgccagtgatgcttaacctgatttcagtgcatttaaatggttctaaaccaatttcttctctttattttccttccaaagtaggatcaatc 4416  T
Q  106 agaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattca 205  Q
    |||||||||| |||||||||||||||  || |||| |||||||||| |||| |||| ||| |||||| ||| ||||| || |  ||||||||||||||||    
T  4415 agaatcttctctgtttcctccagcttagcagcatttttgtcatacacatgcactcttacctagaagttcctgacaagagtttgatatgttggaccattca 4316  T
Q  206 acatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  4315 acatcttgaagtactccattagaccttgtgcttcgtagta 4276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 4133 - 3884
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||||||| ||| ||||||||| ||| |||| ||  ||||||  ||||||||||||||||||||||||||  || ||||| ||||| ||||||||||    
T  4133 atgaaaacagggatgtccatgatgcttgatctgacttttgtgcatacaaatggttctaaacccatttcttctcgagattttccttccatggtaggatcaa 4034  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    ||||||||||||  ||||| || | |||| || ||||||||||||||| |||||||||||| || ||||| || |||   || |||||||||||||||||    
T  4033 tcagaatcttctcagtttcttctaactttgcagcattcttgtcatacacatgcgctctaacacataagtgtctgacataagttttgtatgttggaccatt 3934  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 253  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  3933 caacatcttgaagtactccatgagaccttgtgcttcgtcgtaacctctga 3884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 13131418 - 13131215
Alignment:
Q  39 ttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttctatgtttcctccagctttacaaca 138  Q
    ||||||||||  ||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||| |||||||||||||||   |  |    
T  13131418 ttcagtgcatacaaaaggttctaaacccatttcttctcttgattttccttccaaagtaggatcaatcagaattttctctgtttcctccagcttagtagta 13131319  T
Q  139 ttcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgctt 238  Q
    || |||||||||| |||  |||| ||||||||||| || |||||||| |  |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  13131318 tttttgtcatacacatgttctcttacccagaagtgtctcacaagtgtttgatatgttgggccattcaacatcttgaagtattccattagaccttgtgctt 13131219  T
Q  239 cgta 242  Q
    ||||    
T  13131218 cgta 13131215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 2712702 - 2712654
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  2712702 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 2712654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 8009158 - 8009110
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  8009158 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 8009110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 9089048 - 9089096
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9089048 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9089096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 11009000 - 11009048
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  11009000 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 11009048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24737916 - 24737964
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24737916 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24737964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 26397185 - 26397137
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26397185 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26397137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 26692830 - 26692782
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26692830 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26692782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 40049193 - 40049145
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  40049193 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 40049145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 6589 - 6825
Alignment:
Q  8 aaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcag 107  Q
    ||||||| ||||||||||||| |||||||||||| |||||  |||||| ||||||||||||||||||||  || ||||| |||||||||||||||||||     
T  6589 aaacagggatgcccatgatgcttgacctgatttctgtgcaagtaaatg-ttctaaacccatttcttctcgagattttccttccatagtaggatcaatcaa 6687  T
Q  108 aatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaac 207  Q
    ||||||||   |||| || | ||||  |   ||||||||||||| ||||||||||||| | |||||||| ||||| || |||||||||||||||||||||    
T  6688 aatcttctccatttcttctaactttgtagttttcttgtcatacacatgcgctctaaccaataagtgcctgacaagagttttgtatgttggaccattcaac 6787  T
Q  208 atcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    ||||| ||||| | ||||||||| ||| ||||||||||    
T  6788 atcttaaagtactgcatgagaccgtgtacttcgtagta 6825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 20378772 - 20378538
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||| ||| ||||||||||||  ||||||||||||  ||||  ||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||    
T  20378772 atgaaaatagggatgcccatgatgtttgacctgatttctctgcaagtaaatggttctaaacccatttcttctcgtgattttccttccaaggtaggatcaa 20378673  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    ||| || ||| | | |||| |||| |||  || | ||||| ||||| | ||||||||||||| |||||||||| ||||| ||||||||||||| ||||||    
T  20378672 tcaaaa-cttttctatttcttccaacttagcagccttcttatcataaacatgcgctctaaccaagaagtgcctgacaagagtcttgtatgttgcaccatt 20378574  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttc 239  Q
    |||||| |||||||| |||||||||||||| |||||    
T  20378573 caacattttgaagtactccatgagaccttgagcttc 20378538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 17263145 - 17263394
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||||||| | ||||||||||| |||||||||||| || ||| |||||||||| |||||||||||||||  ||| ||||| ||||  ||||||||||    
T  17263145 atgaaaacagggacgcccatgatgcttgacctgatttctgtccatgtaaatggttccaaacccatttcttcttgtgattttccttccagggtaggatcaa 17263244  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    ||| ||  |||| | |||| ||||||    || | ||| | || || | ||||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  17263245 tcaaaactttctctatttcttccagcagagcagccttcatatcgtaaacatgcgctctgacccagaagtgcctgacaagggtcttgtatgttgggccatt 17263344  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgtagtaccctctga 253  Q
    | |||| |||||||||||||| |||||||| ||||||||||  |||||||    
T  17263345 ctacattttgaagtattccataagaccttgagcttcgtagttgcctctga 17263394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 24648689 - 24648927
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    |||||||||||||| ||||| |||| |||||| || ||||||||| | || |||||||| ||| ||||||||||||| || || ||||  ||||||||||    
T  24648689 atgaaaacaggaatccccattatgcttgaccttatctcagtgcatctgaacggttctaagcccgtttcttctcttgatttaccttccaatgtaggatcaa 24648788  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    || ||||||||| |||||||||||||||  || |||  || |||| || |||  | || |||||||| ||||| ||||| |   ||||||||||||||||    
T  24648789 tctgaatcttctctgtttcctccagcttagcagcatgtttatcatccacatgtacccttacccagaattgccttacaagagatgtgtatgttggaccatt 24648888  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgta 242  Q
    ||||||||||||| | ||||| | ||||||| |||||||    
T  24648889 caacatcttgaagaaatccattaaaccttgtacttcgta 24648927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 22526887 - 22526816
Alignment:
Q  55 ggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttctatgtttcctcc 126  Q
    |||||||| |||| ||| |||||||| || || ||||  ||||||||||||||||||||||  |||||||||    
T  22526887 ggttctaagcccaattcatctcttgatttaccttccaatgtaggatcaatcagaatcttctcagtttcctcc 22526816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 245642 - 245690
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  245642 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 245690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 808762 - 808810
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  808762 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 3355674 - 3355626
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  3355674 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 3355626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 9344933 - 9344981
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9344933 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9344981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 13695609 - 13695561
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  13695609 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 13695561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 29080225 - 29080273
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  29080225 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 29080273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 36296756 - 36296804
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36296756 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36296804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 44484947 - 44484995
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  44484947 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 44484995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 93001 - 92758
Alignment:
Q  1 gaaatgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 100  Q
    |||||||||||||| ||||||||||| | |||||||||||| |||||| |||||||||  |||||| ||||||||||||| || || |||||||||||||    
T  93001 gaaatgaaaacagggatgcccatgatacttgacctgatttctgtgcatgtaaatggtttcaaaccc-tttcttctcttgatttcccttccatagtaggat 92903  T
Q  101 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 200  Q
    ||||||| || |||| |||||| ||||  ||  || | ||| |||| || | ||| ||||| ||||| || ||| | |  || |||||||||||||||||    
T  92902 caatcaggattttctctgtttcttccaatttagcagccttcctgtcgtagacatgtgctcttacccataaatgcatgatgagagtcttgtatgttggacc 92803  T
Q  201 attcaacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||    
T  92802 attcaacatttcgaagtaatccatgagaccttgtgcttcgtagta 92758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 23434359 - 23434130
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||| ||| ||||||||||||| ||||||||| || ||   | | || ||||| || ||||| ||| || |||| |||| ||  |||||||||||||    
T  23434359 atgaaaatagggatgcccatgatgcttgacctgatctctgtaactgtgaagggttccaatcccatatctgctattgattttctctttatagtaggatcaa 23434260  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    |||| || || | || ||| |||| |||  || | || |||||||| | ||| ||||||||||| || | ||||||||  |||||||| |||||||||||    
T  23434259 tcaggattttatctgcttcttccaccttagcagctttattgtcataaacatgtgctctaacccataaattcctaacaatagtcttgtaagttggaccatt 23434160  T
Q  204 caacatcttgaagtattccatgagaccttg 233  Q
    || ||  |||||||||||||||||||||||    
T  23434159 cagcaatttgaagtattccatgagaccttg 23434130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 23445726 - 23445497
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||| ||| ||||||||||||| ||||||||| || ||   | | || ||||| || ||||| ||| || |||| |||| ||  |||||||||||||    
T  23445726 atgaaaatagggatgcccatgatgcttgacctgatctctgtaactgtgaagggttccaatcccatatctgctattgattttctctttatagtaggatcaa 23445627  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    |||| || || | || ||| |||| |||  || | || |||||||| | ||| ||||||||||| || | ||||||||  |||||||| |||||||||||    
T  23445626 tcaggattttatctgcttcttccaccttagcagctttattgtcataaacatgtgctctaacccataaattcctaacaatagtcttgtaagttggaccatt 23445527  T
Q  204 caacatcttgaagtattccatgagaccttg 233  Q
    || ||  |||||||||||||||||||||||    
T  23445526 cagcaatttgaagtattccatgagaccttg 23445497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 21613578 - 21613496
Alignment:
Q  157 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttc 239  Q
    ||||||||| |||||||||| || ||||| |  |||||||| ||||||||||| |||||||| ||||| || |||||||||||    
T  21613578 gctctaaccaagaagtgccttaccagtgtttgatatgttggtccattcaacatattgaagtaatccattaggccttgtgcttc 21613496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 6982934 - 6982886
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  6982934 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 6982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 9343082 - 9343034
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9343082 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9343034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 14037169 - 14037121
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  14037169 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 14037121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 14561787 - 14561835
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  14561787 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 14561835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 22683245 - 22683197
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  22683245 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 22683197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 23303406 - 23303358
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23303406 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23303358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 23369063 - 23369015
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23369063 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23369015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 23703907 - 23703859
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23703907 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23703859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 24574200 - 24574152
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24574200 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24574152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24591795 - 24591843
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24591795 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24591843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 24815041 - 24814993
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24815041 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24814993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24820609 - 24820657
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24820609 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24820657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 27467289 - 27467241
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27467289 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 27467241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 30231160 - 30231208
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  30231160 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 30231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 36586249 - 36586297
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36586249 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36586297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 39494619 - 39494667
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  39494619 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 39494667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 42049907 - 42049859
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  42049907 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 42049859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 1358 - 1599
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    |||||||| ||||| ||||| |||| ||||| |||||||||||||  |||||||||||||||||||||||||||| | ||||| ||||  ||||||||||    
T  1358 atgaaaaccggaatccccattatgcttgaccggatttcagtgcatacaaatggttctaaacccatttcttctcttaattttccttccaatgtaggatcaa 1457  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    |||||||||||| | ||||||| | |||  |  || | || ||||||| ||| ||||| ||||||||||| || ||| |||| |  |||||| |||||||    
T  1458 tcagaatcttctctatttcctctaacttagcttcagttttatcatacacatgtgctctgacccagaagtgtctcacaggtgtttgatatgttcgaccatt 1557  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    || ||| ||||| |||||||  ||||||||||||||||||||    
T  1558 cagcattttgaaatattccaatagaccttgtgcttcgtagta 1599  T

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Target: scaffold0396 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 10611 - 10443
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    |||||||||||||| | |||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||| |||| |||||||||||    
T  10611 atgaaaacaggaatcctcatgatgcttgacctgatttcagtgcatacaaatggttctaaacctatttcttctcttgattttccttccaaagtaggatcaa 10512  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagt 172  Q
    | ||||| |||| | |||||||||||||   | |||| |||||||||| ||| ||||| ||||||||||    
T  10511 ttagaattttctctatttcctccagcttagtagcatttttgtcatacacatgtgctcttacccagaagt 10443  T

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Target: scaffold0084 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41610 - 41854
Alignment:
Q  1 gaaatgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggat 100  Q
    |||||||||||||| ||||||||||||| |||||| ||||  |||||||| |||||||| | ||||||||| ||  |||| ||||| |||| ||||||||    
T  41610 gaaatgaaaacagggatgcccatgatgcttgacctaatttatgtgcatttgaatggttccagacccatttcatcaattgattttccttccagagtaggat 41709  T
Q  101 caatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggacc 200  Q
     |||||  |  || | |||||| |||| |||   | | ||  |||| || |  || ||||||| ||||||||| |||||||||| |||||||||||||||    
T  41710 taatcaacactttttttgtttcttccaacttagtagcctttctgtcgtagacctgtgctctaatccagaagtgtctaacaagtgccttgtatgttggacc 41809  T
Q  201 attcaacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||    
T  41810 attcaacatattgaagtaatccatgagaccttgtgcttcatagta 41854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 956 - 718
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    |||||||  ||||| ||||| |||| |||||| || ||||||||    || |||||||| ||||||||||||||||| || || ||||  ||||||| ||    
T  956 atgaaaatcggaatccccattatgcttgaccttatctcagtgcaaacgaacggttctaagcccatttcttctcttgatttaccttccaatgtaggattaa 857  T
Q  104 tcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccatt 203  Q
    ||| |||||| | ||||||||| |||||  || |||  || ||| ||| ||| || || |||||||| ||||| ||||| |   |||||||||||| |||    
T  856 tcataatcttttctgtttcctcaagcttagcagcatgtttatcaaacacatgtgcccttacccagaaatgccttacaagagatgtgtatgttggactatt 757  T
Q  204 caacatcttgaagtattccatgagaccttgtgcttcgta 242  Q
    || |||||||||||| ||||| | ||||||| |||||||    
T  756 cagcatcttgaagtaatccattaaaccttgtacttcgta 718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 36137794 - 36138014
Alignment:
Q  13 ggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatct 112  Q
    |||||||||||||||| |||||| || ||||||||   ||||||||||||||||||||||||    || |||||||||| ||||||||||||||| | ||    
T  36137794 ggaatgcccatgatgcttgaccttatctcagtgcaaacaaatggttctaaacccatttcttcatgagattttccctccaaagtaggatcaatcagtacct 36137893  T
Q  113 tctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatctt 212  Q
    | | || ||| |||| |||  || | |  ||||| || | |   |||||||||||||||||||| || || || |  |||||||| ||||||||||| ||    
T  36137894 tttctgcttcttccaccttagcaccttctttgtcgtagacacttgctctaacccagaagtgccttacgagcgtttgatatgttggtccattcaacatatt 36137993  T
Q  213 gaagtattccatgagaccttg 233  Q
    |||||| || ||||| |||||    
T  36137994 gaagtaatctatgaggccttg 36138014  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 7511047 - 7511095
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  7511047 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 7511095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 22461095 - 22461035
Alignment:
Q  14 gaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttc 74  Q
    |||||||||||||||  ||||| || ||||||||   |||||||||||| |||||||||||    
T  22461095 gaatgcccatgatgctggaccttatctcagtgcagacaaatggttctaatcccatttcttc 22461035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 36243481 - 36243433
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36243481 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36243433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 38098860 - 38098908
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  38098860 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 38098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 51652925 - 51652877
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  51652925 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 51652877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 12954832 - 12954746
Alignment:
Q  159 tctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    ||||||||| ||||||||||  || |||||||||||||||||||||| ||| ||||| || |||||||||||||| |||||||||||    
T  12954832 tctaacccataagtgcctaatgagagtcttgtatgttggaccattcagcattttgaaatactccatgagaccttgagcttcgtagta 12954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 17220245 - 17220164
Alignment:
Q  157 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgctt 238  Q
    ||||||||||| || |||||||||||  ||||||| ||| ||||||||||||| |||||||| ||||| |||||||| ||||    
T  17220245 gctctaacccaaaaatgcctaacaaggctcttgtaagttagaccattcaacatgttgaagtaatccataagaccttgagctt 17220164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 17251799 - 17251696
Alignment:
Q  4 atgaaaacaggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaa 103  Q
    ||||||||| | ||||||||||||| |||||||||||  |||||| | || ||||| ||||||||||||| |||||  || || |||| | |||||||||    
T  17251799 atgaaaacatggatgcccatgatgcttgacctgatttatgtgcatgtgaagggttccaaacccatttcttatcttgttttaccatccagaataggatcaa 17251700  T
Q  104 tcag 107  Q
    ||||    
T  17251699 tcag 17251696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 18138035 - 18137942
Alignment:
Q  13 ggaatgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatca 106  Q
    |||||||||||||| | ||| || || ||||||||   |||||||||||||||||||||||| |  || |||||||||| ||  ||||||||||    
T  18138035 ggaatgcccatgatacttgatcttatctcagtgcagacaaatggttctaaacccatttcttcacgagattttccctccaaagatggatcaatca 18137942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 18137891 - 18137805
Alignment:
Q  157 gctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtag 243  Q
    |||||||||||||||||||| || || || |  |||||||| ||||||||||| |||||||| || |  |  |||||||||||||||    
T  18137891 gctctaacccagaagtgccttaccagcgtttgatatgttggtccattcaacattttgaagtaatctaataagccttgtgcttcgtag 18137805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 4747551 - 4747599
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  4747551 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 4747599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 5544025 - 5543977
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  5544025 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 5543977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 5872705 - 5872657
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  5872705 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 5872657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 11279404 - 11279356
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  11279404 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 11279356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 12244562 - 12244514
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  12244562 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 12244514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 12293194 - 12293146
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  12293194 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 12293146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12954942 - 12954902
Alignment:
Q  1 gaaatgaaaacaggaatgcccatgatgcgtgacctgatttc 41  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  12954942 gaaatgaaaacagggatgtccatgatgcttgacctgatttc 12954902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 13125522 - 13125570
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| || ||||||||||||||||    
T  13125522 acccatttcttctctggtttttccctccaaagaaggatcaatcagaatc 13125570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 14469452 - 14469500
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| || ||||||||||||||||    
T  14469452 acccatttcttctctggtttttccctccaaagaaggatcaatcagaatc 14469500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 16426163 - 16426115
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  16426163 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 16426115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 23761129 - 23761177
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  23761129 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 23761177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 24390523 - 24390475
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24390523 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24390475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 24663702 - 24663750
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  24663702 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 24663750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 28321242 - 28321194
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  28321242 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 28321194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 38198603 - 38198651
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  38198603 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 38198651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 39375917 - 39375965
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  39375917 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 39375965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 41687481 - 41687529
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  41687481 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 41687529  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 18941607 - 18941852
Alignment:
Q  1 gaaatgaaaacaggaatgccc-atgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtagga 99  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||||| | |||||||  | |||||||||||| || || ||||| |  | || | ||    
T  18941607 gaaatgaaaacagggatgccccatgatgcttgacctgatttcagtgcatctgaatggtttcagacccatttcttccctagattttccttgtagagcatga 18941706  T
Q  100 tcaatcagaatcttctatgtttcctccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcct-aacaagtgtcttgtatgttgga 198  Q
    ||| |||  |||||||  ||||| ||||||||  |  ||||| ||||||| | ||||| ||| ||||| |||||| | | |||| ||||||||||||||     
T  18941707 tcactcaatatcttctcagtttcttccagcttggctgcattcctgtcatagacatgcgttcttacccataagtgcttgatcaag-gtcttgtatgttggc 18941805  T
Q  199 ccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    |||| |||||  |||||||| ||||  |||||| || ||||||||||    
T  18941806 ccatacaacaaattgaagtactccaaaagacctagtacttcgtagta 18941852  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 9769785 - 9769737
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| || ||||||||||||||||    
T  9769785 acccatttcttctctggtttttccctccaaagaaggatcaatcagaatc 9769737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 9904595 - 9904547
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  9904595 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 9904547  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 10270774 - 10270822
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  10270774 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 10270822  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 11402198 - 11402150
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  11402198 acccatttcttctctagtttttccctccaaagtaggatcaaccagaatc 11402150  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 27225218 - 27225266
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27225218 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 27225266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 39177120 - 39177072
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  39177120 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 39177072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 43349191 - 43349239
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  43349191 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 43349239  T

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Target: scaffold0203 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 23685 - 23626
Alignment:
Q  186 cttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| |||||    
T  23685 cttgtaggttggaccattcaacatgttgaagtaatccatgagaccttgagcttcatagta 23626  T

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Target: scaffold0217 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 10523 - 10746
Alignment:
Q  16 atgcccatgatgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttct 115  Q
    |||||||| |||| ||| || || ||||||||   ||||||||||| |||||||||||| |  || ||||||||||  ||||| | ||| || ||||| |    
T  10523 atgcccattatgcttgatcttatctcagtgcagacaaatggttctagacccatttcttcacgagattttccctccagcgtagggttaatgagtatctttt 10622  T
Q  116 atgtttcctccagctttacaacattctt-gtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttga 214  Q
     |||||| || ||||| |||  |||||| ||  || | |  ||||||||||||||||||||| || ||||| |  |||||||| | ||||||||| ||||    
T  10623 ctgtttcttcaagcttaacag-attctttgttgtagacactcgctctaacccagaagtgccttaccagtgtttgatatgttggtcgattcaacatattga 10721  T
Q  215 agtattccatgagaccttgtgcttc 239  Q
    | || ||||| || |||||||||||    
T  10722 aataatccattaggccttgtgcttc 10746  T

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Target: scaffold0324 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 11518 - 11576
Alignment:
Q  187 ttgtatgttggaccattcaacatcttgaagtattccatgagaccttgtgcttcgtagta 245  Q
    ||||| ||||||||||||| |||||||||||| ||||||||  |||| ||||| |||||    
T  11518 ttgtaggttggaccattcagcatcttgaagtaatccatgaggtcttgagcttcatagta 11576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 34948 - 34996
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  34948 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 34996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 43999 - 43951
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  43999 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 43951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 3665214 - 3665262
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  3665214 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 3665262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 12723852 - 12723804
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  12723852 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 12723804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 16952793 - 16952841
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  16952793 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 16952841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 25791502 - 25791550
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  25791502 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 25791550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 26029207 - 26029255
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26029207 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26029255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 26868590 - 26868638
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  26868590 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 26868638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 27376580 - 27376628
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27376580 acccatttcttctctggtttttccctccagagtaggatcaaccagaatc 27376628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 27466937 - 27466985
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27466937 acccatttcttctctggtttttccctccagagtaggatcaaccagaatc 27466985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 454411 - 454459
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    |||||||||||||||||  ||||| |||| ||||||||||| |||||||    
T  454411 acccatttcttctcttgtttttccttccaaagtaggatcaaccagaatc 454459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 10747606 - 10747558
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  10747606 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 10747558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 10961375 - 10961327
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  10961375 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 10961327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 27660459 - 27660507
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  27660459 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 27660507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 36022137 - 36022185
Alignment:
Q  63 acccatttcttctcttgactttccctccatagtaggatcaatcagaatc 111  Q
    ||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  36022137 acccatttcttctctggtttttccctccaaagtaggatcaaccagaatc 36022185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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