View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_336 (Length: 253)
Name: NF10954A_low_336
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_336 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43953610 - 43953856
Alignment:
| Q |
1 |
aagaatatggtcaagcctgagtgtggtttaatggcagcggctactaaacaagtgccaagagaaattcatggacggactaacttaagtcaaattgtgttgg |
100 |
Q |
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| T |
43953610 |
aagaatatggtcaagcctgaatgtggtttaatggcggcggctactaaacaagtgccaagagaaattcatggacggactaacttaagtcaaattgtgttgg |
43953709 |
T |
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| Q |
101 |
acacaaacaagtgcatattcggatggatccaatgagacatatctatccaacaaaaggtggtggttaataaacaagtaccattataattgcccatgctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953710 |
acacaaacaagtgcatattcggatggatccaatgagacatatctatccaacaaaaggtggtggttaataaacaagtaccattataattgcccatgctgtt |
43953809 |
T |
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| Q |
201 |
ggcaaaaaggcaaggagactagcaaagatgtctccaacagtgaggct |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953810 |
ggcaaaaaggcaaggagactagcaaagatgtctccaacagtgaggct |
43953856 |
T |
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