View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_337 (Length: 253)

Name: NF10954A_low_337
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_337
NF10954A_low_337
[»] chr2 (2 HSPs)
chr2 (14-247)||(26661413-26661646)
chr2 (22-152)||(6049912-6050043)
[»] chr6 (2 HSPs)
chr6 (14-247)||(21481331-21481564)
chr6 (14-150)||(19701161-19701298)
[»] chr7 (3 HSPs)
chr7 (28-226)||(13331531-13331727)
chr7 (28-226)||(13342446-13342642)
chr7 (22-152)||(33430223-33430355)
[»] chr5 (1 HSPs)
chr5 (28-226)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (14-181)||(32717808-32717975)
chr8 (14-181)||(10637619-10637786)
[»] chr3 (1 HSPs)
chr3 (28-209)||(15761973-15762154)
[»] chr1 (2 HSPs)
chr1 (14-181)||(22893774-22893941)
chr1 (22-152)||(44306129-44306259)
[»] scaffold0586 (1 HSPs)
scaffold0586 (14-150)||(9594-9731)
[»] chr4 (1 HSPs)
chr4 (22-135)||(13893697-13893810)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 26661646 - 26661413
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
Q  114 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26661546 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg 26661447  T
Q  214 agaatggcaagggtaggagaggtatattgttgga 247  Q
     ||||||||||||||| |||||||| ||||||||    
T  26661446 ggaatggcaagggtagaagaggtattttgttgga 26661413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
Q  22 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaag 121  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || | |||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  122 cagttgatgcaca-cacaaagatcatgggttt 152  Q
    ||||||||| ||| ||||||||| ||||||||    
T  6049943 cagttgatgaacaccacaaagatgatgggttt 6049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 21481564 - 21481331
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
Q  114 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcg 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  21481464 ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagca 21481365  T
Q  214 agaatggcaagggtaggagaggtatattgttgga 247  Q
     ||||||||||||||| |||||||| ||||||||    
T  21481364 ggaatggcaagggtagaagaggtattttgttgga 21481331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 19701298 - 19701161
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||| ||||| |||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
Q  114 ttggcaagcagttgatgcacac-acaaagatcatgggt 150  Q
     | |||||||||||||| |||| |||||||||||||||    
T  19701198 atagcaagcagttgatgaacactacaaagatcatgggt 19701161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 13331531 - 13331727
Alignment:
Q  28 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 127  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  128 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 226  Q
    ||| ||||||||||||||||||||   ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  13331631 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatggcaaggg 13331727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 13342446 - 13342642
Alignment:
Q  28 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 127  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  128 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 226  Q
    ||| ||||||||||||||||||||   ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||    
T  13342546 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 13342642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 33430223 - 33430355
Alignment:
Q  22 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaa-ttagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaa 120  Q
    |||| ||||||| |||||||| ||||||||||||||  ||||  |  ||| ||||||||||||||||| |||| ||||||||  |||| |||| | ||||    
T  33430223 tgatgtcaatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagcaa 33430322  T
Q  121 gcagttgatgcaca-cacaaagatcatgggttt 152  Q
     || |||||| ||| | |||||||| |||||||    
T  33430323 acacttgatgaacacctcaaagatcgtgggttt 33430355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 5672002 - 5672198
Alignment:
Q  28 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 127  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  128 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaatagcgagaatggcaaggg 226  Q
    ||| ||||||||||||||||||||   ||||||| |||| | ||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||    
T  5672102 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 5672198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 32717808 - 32717975
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
Q  114 ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 181  Q
       |||||||||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  32717908 acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 32717975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 10637786 - 10637619
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
Q  114 ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 181  Q
       |||||||||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  10637686 acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 10637619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 15761973 - 15762154
Alignment:
Q  28 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttg 127  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||| |||| ||||||||||||| || |||| ||||  |||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  128 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagtgggaatcagagaaaaagaat 209  Q
    ||| ||| |||||||||||  | |  |||||||| |||| | |||| |||||||||||||||||||||||||||||||||||    
T  15762073 atgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 22893941 - 22893774
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
Q  114 ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 181  Q
       |||||||||||||| |||| |||||||||||||||||| |||| || |||| ||||||||||||||    
T  22893841 acagcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaagatcatgggtgaaaa 22893774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
Q  22 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaag 121  Q
    |||||||||| ||||||||||||||||||||||||||||||   | ||| || |||||||||||||| |||||||||||||| | |||| || | |||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaagaattt-gatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  122 cagttgatgcaca-cacaaagatcatgggttt 152  Q
    ||||||||| ||| ||||||||| ||||||||    
T  44306160 cagttgatgaacaccacaaagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 9731 - 9594
Alignment:
Q  14 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaa 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
Q  114 ttggcaagcagttgatgcacac-acaaagatcatgggt 150  Q
        ||||||||||||| |||| |||||||||||||||    
T  9631 acaacaagcagttgatgaacactacaaagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 13893697 - 13893810
Alignment:
Q  22 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaag 121  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || |  ||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaag 13893796  T
Q  122 cagttgatgcacac 135  Q
    ||||||||| ||||    
T  13893797 cagttgatgaacac 13893810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University