View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_338 (Length: 253)
Name: NF10954A_low_338
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_338 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 30394736 - 30394974
Alignment:
| Q |
3 |
gaaataacctcttcgcttaaacatatgattaacaagagggagaaggaattaaaggctggtgaatccactaagaatgacttattgagtattcttcttgaat |
102 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30394736 |
gaaataacctcttcgcttaaagatatgattaacaagagggagaaagaattaaaggctggtgaatccactaagaatgacttattgagtattcttcttgaat |
30394835 |
T |
|
| Q |
103 |
caaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30394836 |
caaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggca |
30394935 |
T |
|
| Q |
203 |
agaaactacttcggttttgcttgtttggacaatgatatt |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30394936 |
agaaactacttcggttttgcttgtttggacaatgatatt |
30394974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 30384302 - 30384540
Alignment:
| Q |
3 |
gaaataacctcttcgcttaaacatatgattaacaagagggagaaggaattaaaggctggtgaatccactaagaatgacttattgagtattcttcttgaat |
102 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| || | ||||||||| ||||| |||||| ||||||||||||||| ||||||||||| | |
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| T |
30384302 |
gaaataacctcttcgcttaaagatatgattaacaagagggaaaaagcattaaaggcaggtgagcccactaggaatgacttattgagcattcttcttgagt |
30384401 |
T |
|
| Q |
103 |
caaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggca |
202 |
Q |
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|||||| ||||||||||| | || | ||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
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| T |
30384402 |
caaatcgcaaggaaattgacgaaaatgaaaacaacaaggatgtgggaatgagtcttgatgatgtagtcgaggaatgcaagttgttccactttgcaggtca |
30384501 |
T |
|
| Q |
203 |
agaaactacttcggttttgcttgtttggacaatgatatt |
241 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
30384502 |
agagactacttcggttttgcttgtttggacaatgatatt |
30384540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 30483753 - 30483963
Alignment:
| Q |
25 |
atatgattaacaagagggagaaggaattaaaggctggtgaatccactaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaa |
124 |
Q |
| |
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|||| ||||||||||| || | ||| ||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||| || | |
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| T |
30483753 |
atattattaacaagagagaaagagaaataaaggcaggtgaagccactaagaatgacttattaggtattcttcttgagtcaaatcacaaggaaattaaaga |
30483852 |
T |
|
| Q |
125 |
taacaacaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgctt |
224 |
Q |
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|
||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||| | ||| | |||||||| ||||||| ||||| ||||||||| |
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| T |
30483853 |
taacaacaacaataagaatgttggaatgaatcttgatgatgtaatcaaggaatgcaagctattctaccttgcaggggaagaaaccacttcagttttgctt |
30483952 |
T |
|
| Q |
225 |
gtttggacaat |
235 |
Q |
| |
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||||||||||| |
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| T |
30483953 |
gtttggacaat |
30483963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 30424721 - 30424942
Alignment:
| Q |
15 |
tcgcttaaacatatgattaacaagagggagaaggaattaaaggctggtgaatccactaagaatgacttattgagtattcttcttgaatcaaatcataagg |
114 |
Q |
| |
|
||||||| | |||||||||||||||| || | | | ||||||| |||||| |||||||| |||||||||| |||| ||| | || |||||||| || | |
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|
| T |
30424721 |
tcgcttacagatatgattaacaagagagaaagagcactaaaggcaggtgaagccactaaggatgacttattaggtatacttttagagtcaaatcacaaag |
30424820 |
T |
|
| Q |
115 |
aaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttc |
214 |
Q |
| |
|
|||| ||| | || ||||||||||| ||||||||||||||||||| ||||| | |||||||||||| | ||| | |||||||| ||||| || ||||| |
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| T |
30424821 |
aaatggaagaacacggcaacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggccaagagaccacttc |
30424920 |
T |
|
| Q |
215 |
ggttttgcttgtttggacaatg |
236 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
30424921 |
tgttttgcttgtttggacaatg |
30424942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 30430870 - 30430975
Alignment:
| Q |
131 |
caacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttgg |
230 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| | |||||||||||| | ||| | |||||||| ||||| || ||||| ||||||||||||||| |
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|
| T |
30430870 |
caacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggacaagagaccacttctgttttgcttgtttgg |
30430969 |
T |
|
| Q |
231 |
acaatg |
236 |
Q |
| |
|
|||||| |
|
|
| T |
30430970 |
acaatg |
30430975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 30475792 - 30476005
Alignment:
| Q |
25 |
atatgattaacaagagggagaaggaattaaaggctggtgaatccactaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaa |
124 |
Q |
| |
|
|||||||||||||||| |||| | | ||||||| |||||| | |||||| |||| ||||| |||| ||| | || | ||||| || ||||| ||| | |
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| T |
30475792 |
atatgattaacaagagagagatcgcactaaaggcgggtgaagcaactaaggatgatttattaggtatacttttggagttgaatcacaaagaaatggaaga |
30475891 |
T |
|
| Q |
125 |
taacaacaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgctt |
224 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||| ||||| | || ||||||||| | ||| | |||||||||||||| || ||||| ||||||||| |
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|
| T |
30475892 |
acacgacaacaataaggatgtcggaatgagtcttgacgatgtaatagaagaatgcaagctattctactttgcagggcaagagaccacttctgttttgctt |
30475991 |
T |
|
| Q |
225 |
gtttggacaatgat |
238 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
30475992 |
gtttgggcaatgat |
30476005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 30437124 - 30437229
Alignment:
| Q |
130 |
acaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttg |
229 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| | |||||||||||| | ||| | |||||||| ||| || ||||| |||||||||||||| |
|
|
| T |
30437124 |
acaacaataagaatgttggaatgagtcttgacgatgtaatagaggaatgcaagctattctactttgcaggtgcagagacaacttctgttttgcttgtttg |
30437223 |
T |
|
| Q |
230 |
gacaat |
235 |
Q |
| |
|
|||||| |
|
|
| T |
30437224 |
gacaat |
30437229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 30468936 - 30469041
Alignment:
| Q |
131 |
caacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttgg |
230 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||| | |||||||||||| | ||| | |||||||| ||||| || ||||| ||||||||||||||| |
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|
| T |
30468936 |
caacaataaggatgtcggaatgagtcttgatgatgtgatagaggaatgcaagctattctactttgcaggccaagagaccacttctgttttgcttgtttgg |
30469035 |
T |
|
| Q |
231 |
acaatg |
236 |
Q |
| |
|
|||||| |
|
|
| T |
30469036 |
acaatg |
30469041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 8379733 - 8379639
Alignment:
| Q |
147 |
ggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatatt |
241 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||| ||| | || |||||||||||| ||||||| | |||||||||||||||||||||| |
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|
| T |
8379733 |
ggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatatt |
8379639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 23768158 - 23768239
Alignment:
| Q |
151 |
tgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggac |
232 |
Q |
| |
|
|||||||||| | ||||||| |||||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| |
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|
| T |
23768158 |
tgagtcttgaagaagtagtcggggaatgcatgttattccatattgcagggcaagagactacttcagatttgcttgtttggac |
23768239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 23783913 - 23783832
Alignment:
| Q |
151 |
tgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggac |
232 |
Q |
| |
|
|||||||||| | ||||||| |||||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| |
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|
| T |
23783913 |
tgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggac |
23783832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 23768032 - 23768092
Alignment:
| Q |
25 |
atatgattaacaagagggagaaggaattaaaggctggtgaatccactaagaatgacttatt |
85 |
Q |
| |
|
|||| ||||||||||||||||| | | ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
23768032 |
atataattaacaagagggagaaagcaataaaggcaggtgaagccactgagaatgacttatt |
23768092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 41627936 - 41627867
Alignment:
| Q |
172 |
aggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatatt |
241 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| |||||||| ||| ||||||||||||||| |||| |
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|
| T |
41627936 |
aggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtatt |
41627867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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