View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_339 (Length: 252)
Name: NF10954A_low_339
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_339 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 48668861 - 48669103
Alignment:
| Q |
10 |
cagagagtatagtaataaaaagatagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaa |
109 |
Q |
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| T |
48668861 |
cagatagtatagtaataaaaagatagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaa |
48668960 |
T |
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| Q |
110 |
tttcccaactacacaaacaccaattaggtattagcattaactcttttccacccaccttatgtaaaataaatttcatggatttcataaacaactatatata |
209 |
Q |
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| T |
48668961 |
tttcccaactacacaaacaccaattaggtattagcattaactcttttccacccacctcatgtaaaatcaatttcatggatttcataaacaaatatatata |
48669060 |
T |
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| Q |
210 |
aataaacatactaacacaaactagccaatattcctaaacacaa |
252 |
Q |
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| T |
48669061 |
aataaacatactaacacaaactagccaatattcctaaacacaa |
48669103 |
T |
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