View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_341 (Length: 251)
Name: NF10954A_low_341
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_341 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 41754746 - 41754526
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
41754746 |
agagaatgttgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcatatacttaa |
41754647 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
204 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754646 |
gactttaaatt----ttggatgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
41754551 |
T |
|
| Q |
205 |
agtctcaatggtgatatcatatctg |
229 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
41754550 |
agtcccaatggtgatatcatatctg |
41754526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 3395796 - 3395590
Alignment:
| Q |
33 |
gttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatg |
132 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||| |||||||| |||| || ||| ||| ||||| ||| | ||||||||||||||||| |
|
|
| T |
3395796 |
gttaaatatcaacattggataaaatattggaggttgaagaacaaataagtaaaaaataaatcatatacttaagtcttaa----aattttggatgaaaatg |
3395701 |
T |
|
| Q |
133 |
taacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggtt |
232 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||| |||| || |||||||||| |||||||||||||||||| | || |
|
|
| T |
3395700 |
taacatcattttcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtct-ccccataagttccaatggtgatatcatatccgctt |
3395602 |
T |
|
| Q |
233 |
caatattcttgg |
244 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
3395601 |
caacatttttgg |
3395590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 5789244 - 5789028
Alignment:
| Q |
7 |
agaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcacatatttaag |
105 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| | | ||||| |
|
|
| T |
5789244 |
agaatattgtaatgtatcaagtgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaag |
5789145 |
T |
|
| Q |
106 |
actttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtc--gattcacacaagcgttggctcccccat |
203 |
Q |
| |
|
||| || || ||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
5789144 |
tcttgaagtt----ttggatgaagatgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggct-ccccat |
5789050 |
T |
|
| Q |
204 |
aagtctcaatggtgatatcata |
225 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
5789049 |
aagtctcaatgttgatatcata |
5789028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 23142169 - 23141942
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaa-ctcacatattta |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
23142169 |
agagaatattttaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaaactcaaatactta |
23142070 |
T |
|
| Q |
104 |
agactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccat |
203 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23142069 |
agactttaaatt----ttggatgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccat |
23141974 |
T |
|
| Q |
204 |
aagtctcaatggtgatatcatatctggttcaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
23141973 |
aagtctcaatggtgatatcatatctgcttcaa |
23141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 42797657 - 42797423
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
42797657 |
agagaatattgtaaagtattaaatgtatgttaaatcttaatattggataaaatattggaggttggagagtaaataagtgaaaataaactcttatacttaa |
42797558 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
204 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| || | || |
|
|
| T |
42797557 |
gacttta----aattttggatgaagatgtgacatcattatcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgct-cctcgta |
42797463 |
T |
|
| Q |
205 |
agtctcaatggtgatatcatatctggttcaatattcttgg |
244 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
42797462 |
agtctcaatggtgatatcatatctgcttcaacatttttgg |
42797423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 13756257 - 13756485
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13756257 |
agagaatattgtaaagtattaaatatatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcatata----- |
13756351 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
204 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
13756352 |
--ctttaaatt----ttggatgaagatgtaacatcattatcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacata |
13756445 |
T |
|
| Q |
205 |
agtctcaatggtgatatcatatctggttcaatattcttgg |
244 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
13756446 |
agtcccaatggtgatatcatatctgcttcaacatttttgg |
13756485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 10901699 - 10901547
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtat-gttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatattta |
103 |
Q |
| |
|
|||||||||||||| |||| || ||| |||||||||||| ||||||||||||||||||||||||||| | |||| |||||| || | | ||||||| |
|
|
| T |
10901699 |
agagaatattgtaatgtatcaagtgttcagttaaatctcaacattggataaaatattggaggttgaagaacatataaatgaaaaataaattatatattta |
10901600 |
T |
|
| Q |
104 |
agactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctct |
162 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
10901599 |
agtc------ttaattttggatgaagatgtaacatcattttcacttgtgcgattgctct |
10901547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 21589165 - 21588990
Alignment:
| Q |
46 |
attggataaaatattggaggttgaagagtaaataagtg-aaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattat |
144 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||| ||||||| || | ||| ||| ||||| ||| | ||| ||| |||||||| | |
|
|
| T |
21589165 |
attggataaaatattggaggtcgaagaacaaataagtggaaaaaaaactca--tactaaagccttaaaatt----ttgaaagaagatgcgacatcattct |
21589072 |
T |
|
| Q |
145 |
cactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
226 |
Q |
| |
|
||| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
21589071 |
cacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatat |
21588990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 50814510 - 50814733
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
50814510 |
agagaatgttgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaac--acatacttaa |
50814607 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
204 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814608 |
gactttaaatt----ttggatgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
50814703 |
T |
|
| Q |
205 |
agtctcaatggtgatatcatatctggttca |
234 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |
|
|
| T |
50814704 |
agtcccaatggtgatatcatatctgcttca |
50814733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 13228407 - 13228641
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
|||||||||||| | |||| || ||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| || ||| || |||| |
|
|
| T |
13228407 |
agagaatattgtgatgtatcaagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatatccttaa |
13228506 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
204 |
Q |
| |
|
| ||| ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||| || |||||||||||| ||||||| ||||||| |
|
|
| T |
13228507 |
gtcttaaaatt----ttgaatgaaaatgtaacatcattttcacttgtgtgattgctctttctgcaatgcgttgattcacacaagtgttggct-ccccata |
13228601 |
T |
|
| Q |
205 |
agtctcaatggtgatatcatatctggttcaatattcttgg |
244 |
Q |
| |
|
||| ||||||||||||||||||| | ||||| ||| |||| |
|
|
| T |
13228602 |
agtttcaatggtgatatcatatccgcttcaacatttttgg |
13228641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 226
Target Start/End: Original strand, 39974599 - 39974775
Alignment:
| Q |
46 |
attggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatc |
145 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| ||| ||| | |||| | ||| ||| ||||| ||||| ||| ||| |||||||| || |
|
|
| T |
39974599 |
attggataaaatattggaggtcgaagaacaaataagtggaaaaaaaaactcatactaaagccttaaaatt----ttggaagaagatgcgacatcattctc |
39974694 |
T |
|
| Q |
146 |
actcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
226 |
Q |
| |
|
|| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
39974695 |
acctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatat |
39974775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 49953374 - 49953180
Alignment:
| Q |
34 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtg------aaaataaactcacatatttaagactttaaattaattttggatga |
127 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||| ||||||||| |||| ||||||| ||| | ||| ||| | |||||||||||| |
|
|
| T |
49953374 |
ttaaatctcatcattggataaaatattagaggtcgaagaacaaataagtgaaagaaaaaaaaaactcatatactaaagccttaa----aattttggatga |
49953279 |
T |
|
| Q |
128 |
aaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
226 |
Q |
| |
|
| | | |||||||| ||||| ||||| ||| | ||| |||||||| |||| ||||||||| |||| ||||||| |||||| ||| ||||||||||||| |
|
|
| T |
49953278 |
agacgcgacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
49953180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 281679 - 281816
Alignment:
| Q |
34 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgt |
133 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||||| ||| | ||| ||| | ||||||||||||| ||| |
|
|
| T |
281679 |
ttaaatctcatcattggataaaatactggaggtcgaagaacaaataagtgaaaaaaaactcatatactaaagccttaa----aattttggatgaagatgc |
281774 |
T |
|
| Q |
134 |
aacatcattatcactcgtgtgattgctctttatgcaatgtgt |
175 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| |||||||||| |
|
|
| T |
281775 |
gacatcattctcacttgtgtggttgttttttctgcaatgtgt |
281816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 50332299 - 50332064
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
50332299 |
agagaatattgtaatgtattgaatgtatgttaaatctcaatattggataaaatattagaggttgaagagtaaataagtgaaaataaactcatatacttaa |
50332200 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccata |
204 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50332199 |
tactttaaatt----ttggatgaagatgtaacatcattatcactcgtgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccata |
50332104 |
T |
|
| Q |
205 |
agtctcaatggtgatatcatatctggttcaatattcttgg |
244 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
50332103 |
agtcccaatggtgatatcatatctgcttcaacatttttgg |
50332064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 247
Target Start/End: Complemental strand, 12746321 - 12746129
Alignment:
| Q |
50 |
gataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactc |
149 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| ||||||| ||| || || ||||| |||||||||||| ||| |||||||| ||||| |
|
|
| T |
12746321 |
gataaaatattggagatcgaagaacaaataagtgaaaaaaaactcatataccaaa-accttaaa---attttggatgaagatgcgacatcattctcactt |
12746226 |
T |
|
| Q |
150 |
gtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttggaga |
247 |
Q |
| |
|
||||||||||| | | |||||||| |||| ||||||||| |||| |||||| ||| || ||||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
12746225 |
gtgtgattgct-tctctgcaatgtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttcaacatttttggaga |
12746129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 36095931 - 36096041
Alignment:
| Q |
116 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
215 |
Q |
| |
|
||||||||| ||| ||| |||||||| |||| |||| ||| | ||| ||||||||||||| ||||||||| |||| |||||| || ||| |||||| |
|
|
| T |
36095931 |
aattttggaagaagatgcgacatcattctcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatgg |
36096030 |
T |
|
| Q |
216 |
tgatatcatat |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
36096031 |
tgatatcatat |
36096041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 15721589 - 15721438
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
15721589 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaa |
15721490 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgct |
160 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15721489 |
gacttta----aattttggatgaagatgtaacatcattatcactcgtgtgattgct |
15721438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 1594533 - 1594684
Alignment:
| Q |
5 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
1594533 |
agagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaa |
1594632 |
T |
|
| Q |
105 |
gactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgct |
160 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1594633 |
gacttta----aattttggatgaagatgtaacatcattatcactcgtgtgattgct |
1594684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 1599542 - 1599622
Alignment:
| Q |
155 |
attgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaa |
235 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||| |
|
|
| T |
1599542 |
attgctctttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaa |
1599622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 26894729 - 26894835
Alignment:
| Q |
120 |
ttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgat |
219 |
Q |
| |
|
||||||||| ||| ||||| ||| ||| | |||||||| |||||| |||||||||| |||||||||| ||||||| ||||||||||| |||| |||| |
|
|
| T |
26894729 |
ttggatgaagatgaaacat-attctcatttgtgtgatttctctttctgcaatgtgtgtattcacacaactgttggctaccccataagtcccaataatgat |
26894827 |
T |
|
| Q |
220 |
atcatatc |
227 |
Q |
| |
|
|| ||||| |
|
|
| T |
26894828 |
ataatatc |
26894835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 26894686 - 26894725
Alignment:
| Q |
33 |
gttaaatctcaatattggataaaatattggaggttgaaga |
72 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26894686 |
gttaaacctcaacattggataaaatattggaggttgaaga |
26894725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 33617 - 33401
Alignment:
| Q |
7 |
agaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcacatatttaag |
105 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| | | ||||| |
|
|
| T |
33617 |
agaatattgtaatgtatcaagtgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaag |
33518 |
T |
|
| Q |
106 |
actttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtc--gattcacacaagcgttggctcccccat |
203 |
Q |
| |
|
||| || || ||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
33517 |
tcttgaagtt----ttggatgaagatgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggct-ccccat |
33423 |
T |
|
| Q |
204 |
aagtctcaatggtgatatcata |
225 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
33422 |
aagtctcaatgttgatatcata |
33401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 43387441 - 43387253
Alignment:
| Q |
34 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgt |
133 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| | ||||||||||| || ||| ||| ||||| ||| | ||||||||||||| |||| |
|
|
| T |
43387441 |
ttaaatttcaacgttggataaaatattggaggttgaagaacatataagtgaaaaataaatcatatacttaagtcttaa----aattttggatgaagatgt |
43387346 |
T |
|
| Q |
134 |
aacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
227 |
Q |
| |
|
||||| ||| ||||| ||||||||||| ||| | || |||||| ||||||||||| ||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
43387345 |
aacattattttcacttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggat-ccccataagtcccaatggtgatatcatatc |
43387253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 14347 - 14458
Alignment:
| Q |
116 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
215 |
Q |
| |
|
||||||||||||| ||||||||| | | ||||| |||||||||| |||| | |||||||| |||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
14347 |
aattttggatgaagatgtaacattagtctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctccataagtcttaatgg |
14446 |
T |
|
| Q |
216 |
tgatatcatatc |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14447 |
tgatatcatatc |
14458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 33014218 - 33014030
Alignment:
| Q |
34 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgt |
133 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |||||| |||||| ||||||| ||| | ||| ||| | |||||| |||||||||| |
|
|
| T |
33014218 |
ttaaatctcatcattggataaaatattggaggtcgaagaacaaataaatgaaaaaaaactcatatactaaagtcttaa----aattttagatgaaaatgc |
33014123 |
T |
|
| Q |
134 |
aacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
226 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
33014122 |
gacatcattctcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatat |
33014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 38016182 - 38016086
Alignment:
| Q |
130 |
atgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
227 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| |||||| | |||||||||||||| | ||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
38016182 |
atgtaacatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggct-ccccataagtcccaatggcgatatcatatc |
38016086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 50548 - 50473
Alignment:
| Q |
20 |
gtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactca |
95 |
Q |
| |
|
||||||| ||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
50548 |
gtattaagtgtgagttaaatctccacattggataaaatattggaggttagagaataaataagtgaaaaaaaactca |
50473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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