View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_342 (Length: 251)
Name: NF10954A_low_342
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_342 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4124003 - 4124241
Alignment:
| Q |
1 |
gctgcatctgctgggtgtgtgaaactatcccagattgttgcttcagaactgatatcactcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4124003 |
gctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
4124102 |
T |
|
| Q |
101 |
ttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4124103 |
ttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttga |
4124202 |
T |
|
| Q |
201 |
atctttgagtggttgatctctgtttgcaatccatatatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4124203 |
atctttgagtggttgatctctgtttgcaatccatatatt |
4124241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4153353 - 4153591
Alignment:
| Q |
1 |
gctgcatctgctgggtgtgtgaaactatcccagattgttgcttcagaactgatatcactcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4153353 |
gctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
4153452 |
T |
|
| Q |
101 |
ttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4153453 |
ttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttga |
4153552 |
T |
|
| Q |
201 |
atctttgagtggttgatctctgtttgcaatccatatatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4153553 |
atctttgagtggttgatctctgtttgcaatccatatatt |
4153591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4134548 - 4134783
Alignment:
| Q |
1 |
gctgcatctgctgggtgtgtgaaactatcccagattgttgcttcagaactgatatcactcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
100 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| ||||| |||| || || | ||||||||| |||| |||| |||||| ||||||||||| |
|
|
| T |
4134548 |
gctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaat |
4134647 |
T |
|
| Q |
101 |
ttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4134648 |
ttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttga |
4134747 |
T |
|
| Q |
201 |
atctttgagtggttgatctctgtttgcaatccatat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134748 |
atctttgagtggttgatctctgtttgcaatccatat |
4134783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 4145362 - 4145585
Alignment:
| Q |
13 |
gggtgtgtgaaactatcccagattgttgcttcagaactgatatcactcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| || || | ||||||||| |||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
4145362 |
gggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatg |
4145461 |
T |
|
| Q |
113 |
aaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatttgaatctttgagtgg |
212 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4145462 |
aaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtgg |
4145561 |
T |
|
| Q |
213 |
ttgatctctgtttgcaatccatat |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4145562 |
ttgatctctgtttgcaatccatat |
4145585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 4163709 - 4163950
Alignment:
| Q |
4 |
gcatctgctgggtgtgtgaaactatcccagattgttgcttcagaactgatatcactcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttg |
103 |
Q |
| |
|
||||| || ||||| |||||||||||||| ||||||| | |||| |||| ||||| | ||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
4163709 |
gcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaattta |
4163808 |
T |
|
| Q |
104 |
ttgaa----ga--tgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattccatt |
197 |
Q |
| |
|
||||| || ||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4163809 |
ttgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatt |
4163908 |
T |
|
| Q |
198 |
tgaatctttgagtggttgatctctgtttgcaatccatatatt |
239 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163909 |
tgaatccttgagtggttgatctctgtttgcaatccatatatt |
4163950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University