View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_35 (Length: 430)
Name: NF10954A_low_35
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 40606313 - 40605897
Alignment:
| Q |
7 |
atggtgttaccgtgctactatttattttttcaataaatttaaattactttttataaagccaattcatttcgcattcaaaatcaattattatcacggccgt |
106 |
Q |
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| T |
40606313 |
atggtgttaccgtgctactatttattttttcaataaatttaaattactttttataaagccaattcatttcgcattcaaaatcaattattatcacggccgt |
40606214 |
T |
|
| Q |
107 |
aaaaccaaccacgcatgtaaattagtgagctgccaccagtcaccactcaccaagagctgccgtttggagcaactaaattattgcctttacaatttacata |
206 |
Q |
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| T |
40606213 |
aaaaccaaccacgcatgtaaattagtgagctgccactagtcaccactcaccaagagctgccgtctggagcaagtaaattattgcctttacaatttacaaa |
40606114 |
T |
|
| Q |
207 |
tacagggcctggttgtgcagctgagttagaatagaatagcttgcaagttgcaataggccgtagggagtatatgccccagatttgttggcgaatattggtt |
306 |
Q |
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| T |
40606113 |
tacagggcctggttgtgcagctgagttagaatagaatagcttgcaagttgcaataggccgtagggagtat-tgccccagatttgttggcgaatattggtt |
40606015 |
T |
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| Q |
307 |
ccaataataatatatacaactgcacttggttgttgtgacttgtgagggagtttaaatgcacagaacctcaagaattcatttgttctttcaaaatatggta |
406 |
Q |
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| T |
40606014 |
ccaataataatatatacaactgcacttggttgttgggacttgtgagggagtttaaatgcacagaacctcaagaattcatttgttctttcaaaatatggta |
40605915 |
T |
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| Q |
407 |
atattatcatgtaaattt |
424 |
Q |
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| T |
40605914 |
atattatcatgtaaattt |
40605897 |
T |
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