View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_350 (Length: 250)
Name: NF10954A_low_350
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_350 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 38567058 - 38567284
Alignment:
| Q |
2 |
tcgactttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccgg |
101 |
Q |
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| T |
38567058 |
tcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccgg |
38567157 |
T |
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| Q |
102 |
ataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaatt |
201 |
Q |
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| T |
38567158 |
ataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaatt |
38567257 |
T |
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| Q |
202 |
gtctcaaacattttgtaagccgccgcc |
228 |
Q |
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| T |
38567258 |
gtctcaaacattttgtaagccgccgcc |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 38525935 - 38526162
Alignment:
| Q |
4 |
gactttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggat |
103 |
Q |
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| T |
38525935 |
gactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggat |
38526034 |
T |
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| Q |
104 |
aactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526035 |
aactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
38526134 |
T |
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| Q |
204 |
ctcaaacattttgtaagccgccgcctga |
231 |
Q |
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| T |
38526135 |
ctcaaacattttgtaagccgccgcctga |
38526162 |
T |
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