View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_355 (Length: 250)

Name: NF10954A_low_355
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_355
NF10954A_low_355
[»] chr7 (3 HSPs)
chr7 (4-250)||(33440102-33440348)
chr7 (131-219)||(34935346-34935434)
chr7 (173-247)||(7488841-7488915)
[»] chr2 (4 HSPs)
chr2 (130-247)||(3552387-3552504)
chr2 (173-245)||(25410786-25410858)
chr2 (176-247)||(31615607-31615678)
chr2 (173-219)||(19378039-19378085)
[»] chr1 (2 HSPs)
chr1 (130-247)||(17895314-17895431)
chr1 (173-247)||(9885669-9885743)
[»] scaffold0262 (1 HSPs)
scaffold0262 (75-134)||(2452-2511)
[»] chr5 (2 HSPs)
chr5 (173-244)||(17197694-17197765)
chr5 (173-247)||(32718427-32718501)
[»] chr4 (8 HSPs)
chr4 (175-247)||(7620704-7620776)
chr4 (174-232)||(32495116-32495174)
chr4 (130-214)||(19585812-19585896)
chr4 (173-245)||(36755865-36755937)
chr4 (173-219)||(24522309-24522355)
chr4 (195-245)||(25940234-25940284)
chr4 (150-231)||(53095279-53095360)
chr4 (129-161)||(18376108-18376140)
[»] chr3 (2 HSPs)
chr3 (147-247)||(23687583-23687683)
chr3 (147-247)||(24059820-24059920)
[»] chr8 (3 HSPs)
chr8 (173-219)||(27286922-27286968)
chr8 (130-219)||(36017311-36017403)
chr8 (173-210)||(29959987-29960024)
[»] chr6 (4 HSPs)
chr6 (173-219)||(8839330-8839376)
chr6 (173-230)||(6002574-6002631)
chr6 (138-219)||(2900749-2900830)
chr6 (195-247)||(30230633-30230685)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 33440102 - 33440348
Alignment:
Q  4 atgtcgaagaatatgttgatgtataagtgtgaattagaagtttgacatggaatgtaattttgtctaatacggttgaatgtaattatggtgcacaatatat 103  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33440102 atgtggaataatatgttgatgtataagtgtgaattagaagtttgacgttgaatgtaattttgtctaatacggttgaatgtaattatggtgcacaatatat 33440201  T
Q  104 atgattaaataataggggaaatatatgtgtggactcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttg 203  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  33440202 atgattaaataataggggaaatatatgtgtggactcgaaagagtcgttaatgcttgctaccgtgtagagagttgatggatcttgacttgtttctgtgttg 33440301  T
Q  204 gcggacgattcatacgtcagcttaagattctccattcactttgtgtg 250  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  33440302 gcggacgattcatacgccagcttaagattctccattcactttgtgtg 33440348  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 34935346 - 34935434
Alignment:
Q  131 tgtggactcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacg 219  Q
    ||||||||||||| ||||||||||| |||||  |||| ||  ||||||||||  | ||||||||| ||||||||| |||||||||||||    
T  34935346 tgtggactcgaaagagtcgttaatgtttgctgtcgtgcaggaagttgatggacattgaattgtttatgtgttggcagacgattcatacg 34935434  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 7488841 - 7488915
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttgt 247  Q
    ||||||||||||| ||||||||| |||| |||| |  ||||||||||  ||||||| |||| |||||||||||||    
T  7488841 agttgatggatcttgaattgtttatgtgctggccgttgattcatacgctagcttaatattcaccattcactttgt 7488915  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 3552387 - 3552504
Alignment:
Q  130 gtgtggactcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaag 229  Q
    |||||||||||||| |||||||||| |||||| ||||||||  ||||||||||||| ||||||| ||| ||||||| ||||||||| ||| ||  ||||     
T  3552387 gtgtggactcgaaagagtcgttaatacttgctgccgtgtagggagttgatggatcttgaattgtctctttgttggcagacgattcaaacgccaatttaat 3552486  T
Q  230 attctccattcactttgt 247  Q
    ||||  ||||||||||||    
T  3552487 attcgtcattcactttgt 3552504  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 25410858 - 25410786
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcacttt 245  Q
    ||||||||||| | ||||||||||||||||||| ||| ||||||||| |||| ||| |||| |||||||||||    
T  25410858 agttgatggattttgaattgtttctgtgttggcagacaattcatacgccagcctaaaattcaccattcacttt 25410786  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 31615678 - 31615607
Alignment:
Q  176 tgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttgt 247  Q
    ||||| |||| |||| |||||||||||||| ||||||||||| | || |||||||||| |||||||||||||    
T  31615678 tgatgaatcttgaatggtttctgtgttggcagacgattcatatgccaacttaagattcaccattcactttgt 31615607  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 19378039 - 19378085
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacg 219  Q
    ||||||||||||| ||||||||| ||||||| | |||||||||||||    
T  19378039 agttgatggatcttgaattgtttttgtgttgacagacgattcatacg 19378085  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 17895314 - 17895431
Alignment:
Q  130 gtgtggactcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaag 229  Q
    |||||||||| ||| ||||||||||||||| |  |||| ||  ||||||||||||| ||||||||| ||| ||||  ||||||||||||| || ||||||    
T  17895314 gtgtggactcaaaagagtcgttaatgcttgttgacgtgcagggagttgatggatcttgaattgtttttgtcttggtagacgattcatacgccaacttaag 17895413  T
Q  230 attctccattcactttgt 247  Q
    |||| |||||||||||||    
T  17895414 attcgccattcactttgt 17895431  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 9885669 - 9885743
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttgt 247  Q
    ||||||||||||| ||   | |||| ||||||| |||||||||||||||| |||||||||| ||||||| |||||    
T  9885669 agttgatggatcttgatcagattctctgttggcagacgattcatacgtcaacttaagattcgccattcaatttgt 9885743  T

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Target: scaffold0262 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 2511 - 2452
Alignment:
Q  75 gttgaatgtaattatggtgcacaatatatatgattaaataataggggaaatatatgtgtg 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  2511 gttgaatgtaattatggtgcacaatatatatgactaaataataggagaaatatgtgtgtg 2452  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 17197765 - 17197694
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactt 244  Q
    ||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||    
T  17197765 agttgatggatcttggattgtttctatgttggcagacgattcatacgtcagcttaagattcgtcattcactt 17197694  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 32718501 - 32718427
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttgt 247  Q
    ||||||||||| | |||| |||||||| ||||| || ||||||||||||||| ||||||||  ||||||||||||    
T  32718501 agttgatggatattgaatggtttctgtcttggcagaagattcatacgtcagcctaagattcgtcattcactttgt 32718427  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 7620776 - 7620704
Alignment:
Q  175 ttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttgt 247  Q
    ||||||||||| ||||||||| ||||||||  ||||||||||||| || |||||||||  |||||||||||||    
T  7620776 ttgatggatcttgaattgtttttgtgttggtagacgattcatacgccatcttaagatttgccattcactttgt 7620704  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 32495174 - 32495116
Alignment:
Q  174 gttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagatt 232  Q
    |||||||||||| || | |||||||||||||| ||||||||||||  ||||||||||||    
T  32495174 gttgatggatcttgattggtttctgtgttggcagacgattcatacaccagcttaagatt 32495116  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 19585896 - 19585812
Alignment:
Q  130 gtgtggactcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattc 214  Q
    |||||||||||||| ||||||||||||||| |   ||| ||  ||||||| ||||| |||||||||| || ||||| ||||||||    
T  19585896 gtgtggactcgaaagagtcgttaatgcttgttgtggtgcagggagttgatagatcttgaattgtttccgttttggcagacgattc 19585812  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 36755865 - 36755937
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcacttt 245  Q
    ||||||||||||| ||||||| ||| ||||| | ||| |||||||||| |||||||||||  | |||||||||    
T  36755865 agttgatggatcttgaattgtctctatgttgccagacaattcatacgtaagcttaagatttgctattcacttt 36755937  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 24522309 - 24522355
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacg 219  Q
    ||||||||||||| |||||||||||||| | || |||||||||||||    
T  24522309 agttgatggatcttgaattgtttctgtgctagcagacgattcatacg 24522355  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 25940284 - 25940234
Alignment:
Q  195 tctgtgttggcggacgattcatacgtcagcttaagattctccattcacttt 245  Q
    ||||||||||| ||||||||||||  |||||||||||||  ||||||||||    
T  25940284 tctgtgttggcagacgattcatacaccagcttaagattcgtcattcacttt 25940234  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 53095279 - 53095360
Alignment:
Q  150 ttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagat 231  Q
    ||||||||||||  |||| ||  |||||||| |||| ||||||||||||||||||| ||  |||||| || || ||||||||    
T  53095279 ttaatgcttgctgtcgtgcagggagttgatgaatcttgaattgtttctgtgttggcagaaaattcattcgccaacttaagat 53095360  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 18376108 - 18376140
Alignment:
Q  129 tgtgtggactcgaaatagtcgttaatgcttgct 161  Q
    ||||||||||||||| |||||||||||||||||    
T  18376108 tgtgtggactcgaaagagtcgttaatgcttgct 18376140  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 23687683 - 23687583
Alignment:
Q  147 tcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttg 246  Q
    |||||||||||||||  |||| ||  ||||||||||||| |||||||| ||||||| || || ||||||| || ||||||||||||   |||||||||||    
T  23687683 tcgttaatgcttgctgtcgtgcagggagttgatggatcttgaattgttcctgtgttagcagatgattcattcgccagcttaagatttgtcattcactttg 23687584  T
Q  247 t 247  Q
    |    
T  23687583 t 23687583  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 24059920 - 24059820
Alignment:
Q  147 tcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaagattctccattcactttg 246  Q
    |||||||||||||||  |||| ||  ||||||||||||| |||||||| ||||||| || || ||||||| || ||||||||||||   |||||||||||    
T  24059920 tcgttaatgcttgctgtcgtgcagggagttgatggatcttgaattgttcctgtgttagcagatgattcattcgccagcttaagatttgtcattcactttg 24059821  T
Q  247 t 247  Q
    |    
T  24059820 t 24059820  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 27286922 - 27286968
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacg 219  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27286922 agttgatggatcttgaattgtttctgtgttggcagacgattcatacg 27286968  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 36017403 - 36017311
Alignment:
Q  130 gtgtggactcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggat---ctagaattgtttctgtgttggcggacgattcatacg 219  Q
    |||||| ||||||| ||||||||||||||||| | ||| ||  |||||||||||   || ||||||||| |||||||   |||||||||||||    
T  36017403 gtgtgggctcgaaagagtcgttaatgcttgctgctgtgcagggagttgatggatcaacttgaattgtttatgtgttgatagacgattcatacg 36017311  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 29960024 - 29959987
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacg 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  29960024 agttgatggatcttgaattgtttctgtgttggcagacg 29959987  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 8839376 - 8839330
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacg 219  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||    
T  8839376 agttgatggatcttgaattgtttctgtgttgccagacgattcatacg 8839330  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 6002631 - 6002574
Alignment:
Q  173 agttgatggatctagaattgtttctgtgttggcggacgattcatacgtcagcttaaga 230  Q
    |||| |||||||| ||||||||||||||||||  ||||||||||||| || |||||||    
T  6002631 agttaatggatcttgaattgtttctgtgttggtagacgattcatacgccaccttaaga 6002574  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 2900830 - 2900749
Alignment:
Q  138 tcgaaatagtcgttaatgcttgctaccgtgtagacagttgatggatctagaattgtttctgtgttggcggacgattcatacg 219  Q
    |||||| ||||| ||||||||| | ||||| |   |||||||| |||| ||||||||||| ||||| | |||||||||||||    
T  2900830 tcgaaagagtcgctaatgcttgttgccgtgcatggagttgatgaatcttgaattgtttctatgttgacagacgattcatacg 2900749  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 30230685 - 30230633
Alignment:
Q  195 tctgtgttggcggacgattcatacgtcagcttaagattctccattcactttgt 247  Q
    ||||||||||| ||| || ||||| |||||||||||||  |||||||||||||    
T  30230685 tctgtgttggcagacaatacatacatcagcttaagatttgccattcactttgt 30230633  T

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