View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_36 (Length: 429)
Name: NF10954A_low_36
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 47797174 - 47797588
Alignment:
| Q |
10 |
accgagagtaaaatgagatgaaaaacttgtatcaagatgattttgatgcgcgtaccaatataacaaaacaataaaagtaatgtgcaaggcattgtgagaa |
109 |
Q |
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| T |
47797174 |
accgagagtaaaatgagatgaaaaacttgtatcaagatgattttgatgcgcgtaccaatataacaaaacaataaaagtaatgtgcaaggcattgtgagaa |
47797273 |
T |
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| Q |
110 |
aaacaaagttaccttaatctcatcatctgaatacggcgctttcctatacatgtcaagacccaaaactgagtagtgatgtgataatgcatagtttacactt |
209 |
Q |
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| T |
47797274 |
aaaaaaagttaccttaatctcatcatctgaatacggcgctttcctatacatgtcaagacccaaaactgagtagtgatgtgacaatgcatagtttccactt |
47797373 |
T |
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| Q |
210 |
tctctcggtgtttctcgataactagttctcctgtctttgtatgaagtatcattcttcggatacggatattctgtttggaaatgctgattgggagcatgtt |
309 |
Q |
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| T |
47797374 |
tctctcggtgtttctcgataactagttctcctgtctttgtatgaagtatcattcttcggatatgaatattctgtttggaaatgctgattgggagcatgtt |
47797473 |
T |
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| Q |
310 |
ccttccatctttcaaagcctccattgtacttattcctttctctgttaaaagcattttgcgcacgccttattcgttcctcttgcattggcttattgtgttt |
409 |
Q |
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| T |
47797474 |
ccttccaactttcaaagcctccactgtacttattcctttctctgttaaaagcgttttgcgcacgccttattagttcctcttgcattggcttattgtgttt |
47797573 |
T |
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| Q |
410 |
tgttgtgtaagaact |
424 |
Q |
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| T |
47797574 |
tgttgtgtaagaact |
47797588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 160 - 387
Target Start/End: Original strand, 47803498 - 47803734
Alignment:
| Q |
160 |
tgtcaagacccaaaactgagtagtgatgtgataatgcatagtttacactttctctcggtgtttctcgataactagttctcctgtctttgtatgaagtatc |
259 |
Q |
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| T |
47803498 |
tgtcaagacccaaaactgagtagtgatgtgataaggcatagtttccgctctctcttggagtttctcgataattagtcctcctgtctctgtatgaattatc |
47803597 |
T |
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| Q |
260 |
attcttcggatacggatattctgtttggaaatgctga---------ttgggagcatgttccttccatctttcaaagcctccattgtacttattcctttct |
350 |
Q |
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| T |
47803598 |
agtcttccaataccaatcttctctttggaaatgttgatgatatgcgttgggaccatgttccctccagctttcgtaccctcttttgaatttatttctttct |
47803697 |
T |
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| Q |
351 |
ctgttaaaagcattttgcgcacgccttattcgttcct |
387 |
Q |
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| T |
47803698 |
ctgttaaacacgttttgcatacgccttattcgttcct |
47803734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 47802987 - 47803056
Alignment:
| Q |
85 |
agtaatgtgcaaggcattgtgagaaaaacaaagttaccttaatctcatcatctgaatacggcgctttccta |
155 |
Q |
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| T |
47802987 |
agtaatgtgcaaggcattgtgag-aaaataaagttaccttaatctctgcatctgaatatggtgctttccta |
47803056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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