View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_360 (Length: 250)

Name: NF10954A_low_360
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_360
NF10954A_low_360
[»] chr1 (14 HSPs)
chr1 (9-153)||(13244107-13244251)
chr1 (158-250)||(13244450-13244542)
chr1 (152-248)||(13080788-13080884)
chr1 (84-153)||(12963575-12963644)
chr1 (150-239)||(19279089-19279178)
chr1 (79-146)||(19278827-19278894)
chr1 (151-248)||(12963797-12963894)
chr1 (155-246)||(13086282-13086373)
chr1 (157-216)||(13094604-13094663)
chr1 (157-216)||(13130033-13130092)
chr1 (157-206)||(13161736-13161785)
chr1 (157-216)||(13101205-13101264)
chr1 (9-88)||(19278730-19278809)
chr1 (158-239)||(13271768-13271849)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 13244450 - 13244542
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctg 13244542  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 13080788 - 13080884
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatc 248  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || | |||||||||||||||||||||||||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatc 13080884  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 19279089 - 19279178
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgc 239  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| | ||| ||| |  ||||| | |||||||||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgc 19279178  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 12963797 - 12963894
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatc 248  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | ||||||| |  ||||| | ||||||||||| || |||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatc 12963894  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 13086373 - 13086282
Alignment:
Q  155 agcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaa 246  Q
    ||||| |||| || || |||||||||||||| ||||||||| | || ||||| | ||||||| |  ||||||||||||||||||| ||||||    
T  13086373 agcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaa 13086282  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13094663 - 13094604
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13094604  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13130092 - 13130033
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13130033  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 13161785 - 13161736
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 206  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggct 13161736  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13101264 - 13101205
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | |||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcct 13101205  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 13271849 - 13271768
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgc 239  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| || || | ||||||| |  ||||| | |||||||||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgc 13271768  T

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