View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_362 (Length: 250)
Name: NF10954A_low_362
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_362 |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 17450568 - 17450805
Alignment:
| Q |
13 |
aatatttgtgctgcttccacagattcctccatccagctttggcatcaacatcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17450568 |
aatatttgtgctgcttccacagattcctccatccagctttggcatcaacgtcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtc |
17450667 |
T |
|
| Q |
113 |
atttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17450668 |
atttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttc |
17450767 |
T |
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| Q |
213 |
accgtttgatcttgtccactctgatatttggggacctg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
17450768 |
accgtttgatcttgtccactctgatatttggggacctg |
17450805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 14825295 - 14825471
Alignment:
| Q |
13 |
aatatttgtgctgcttccacagattcctccatccagctttggcatcaacatcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtc |
112 |
Q |
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||||| ||||| ||||||| |||||| ||||| || ||||||||| | ||||||| |||| ||| |||||||| ||| ||| || |||||||||||| |
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| T |
14825295 |
aatatatgtgccgcttccaaagattcttccattcaactttggcatggtcgtcttgcttatagttcttttggaaaaatgcttccccttatgtctcaaggtc |
14825394 |
T |
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| Q |
113 |
atttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaat |
189 |
Q |
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| T |
14825395 |
atttaggatctgttacaaatgagtcttttaattgtactccttgtcaaactactaaacaaccagctttatcatttaat |
14825471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 24431519 - 24431756
Alignment:
| Q |
13 |
aatatttgtgctgcttccacagattcctccatccagctttggcatcaacatcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24431519 |
aatatttgtgctgcttccacagattcctccatccagctttggcatcaacgtcttgctcatagctctattggaaaattgcgtcctctagtgtttcaaggtc |
24431618 |
T |
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| Q |
113 |
atttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24431619 |
atttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttc |
24431718 |
T |
|
| Q |
213 |
accgtttgatcttgtccactctgatatttggggacctg |
250 |
Q |
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| T |
24431719 |
accgtttgatcttgtccactctgatatttggggacctg |
24431756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 29990441 - 29990607
Alignment:
| Q |
79 |
attggaaaattgcgtcctctagtgtctcaaggtcatttaggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctt |
178 |
Q |
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||||| ||||| ||||||||| ||||||||||| |||||||||| || || | ||||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
29990441 |
attggtaaattacgtcctctaatgtctcaaggttatttaggatctgtcaccagtgagtcttttgattgtactgcttgtcaaagtgctaaacaacctgctt |
29990540 |
T |
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| Q |
179 |
tgtcatttaataaaagtactaatatttcagcttcaccgtttgatcttgtccactctgatatttgggg |
245 |
Q |
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| T |
29990541 |
tatcttttcataaatgtacatccatttcagcttcaccgtttgatctagtgcattctgatatttgggg |
29990607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 16502418 - 16502647
Alignment:
| Q |
16 |
atttgtgctgcttccacagattcctccatccagctttggcatcaacatcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtcatt |
115 |
Q |
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|||||||| ||||||||| |||| || || || || ||||||| | || ||||||| || ||||| || |||||| ||||||||||||||||| || |
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| T |
16502418 |
atttgtgcagcttccacacattcgtcaattcaactctggcatcgtcgtccagctcataattcaattggtaagttgcgttctctagtgtctcaaggttatc |
16502517 |
T |
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| Q |
116 |
taggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttcacc |
215 |
Q |
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||||||| || | | |||||||||| |||||| ||| ||| |||| ||||||||||||| ||||| || |||||||||||| ||||||| |||||| |
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| T |
16502518 |
taggatctgtcgccagtgagtcttttaattgtagtgcttgtgaaacttctaaacaaccagccttgtctttcaataaaagtacttccatttcagtttcacc |
16502617 |
T |
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| Q |
216 |
gtttgatcttgtccactctgatatttgggg |
245 |
Q |
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||||||||||| || |||||||||||||| |
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| T |
16502618 |
atttgatcttgtgcattctgatatttgggg |
16502647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 53017795 - 53017561
Alignment:
| Q |
16 |
atttgtgctgcttccacagattcctccatccagctttggcatcaacatcttgctcatagctctattggaaaattgcgtcctctagtgtctcaaggtcatt |
115 |
Q |
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|||||||| ||||||||| |||| |||| | ||||||||||| | ||| | ||||| || ||||| || ||||||||||||||||||| |||| ||| |
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| T |
53017795 |
atttgtgcagcttccacacattcgcccattgaactttggcatcatcgtctagtacatagttcaattggtaagttgcgtcctctagtgtctcgaggttatt |
53017696 |
T |
|
| Q |
116 |
taggatcagtaactaatgagtcttttgattgtactgcctgtcaaacggctaaacaaccagctttgtcatttaataaaagtactaatatttcagcttcacc |
215 |
Q |
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|||||| || | ||||||||||||||||||||||| ||| ||| |||||||||| || ||||| || || |||||||| ||||||| |||||| |
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| T |
53017695 |
taggatatgtcgccaatgagtcttttgattgtactgcttgttaaattgctaaacaactagtcttgtctttcgattaaagtacttccatttcagtttcacc |
53017596 |
T |
|
| Q |
216 |
gtttgatcttgtccactctgatatttggggacctg |
250 |
Q |
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|||||| | || || ||| |||||||||| |||| |
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| T |
53017595 |
atttgatatagtgcattctaatatttggggtcctg |
53017561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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