View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_363 (Length: 250)

Name: NF10954A_low_363
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_363
NF10954A_low_363
[»] chr1 (4 HSPs)
chr1 (8-111)||(24621224-24621328)
chr1 (192-241)||(24621063-24621112)
chr1 (49-111)||(47569683-47569746)
chr1 (192-241)||(47569859-47569908)
[»] chr4 (1 HSPs)
chr4 (49-91)||(8331981-8332023)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 24621328 - 24621224
Alignment:
Q  8 attgtaacctgcagaacaacaaggagtcacactctccctgcgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgta 106  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24621328 attgtaacctgcagaacaacaaggagtcacactctccttgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgcttttgttgaatgta 24621229  T
Q  107 gatta 111  Q
    |||||    
T  24621228 gatta 24621224  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 24621112 - 24621063
Alignment:
Q  192 tttgattataaaaatacgcctttgattgtcttggcttgtgacatattctt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24621112 tttgattataaaaatacgcctttgattgtcttggcttgtgacattttctt 24621063  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 47569683 - 47569746
Alignment:
Q  49 gtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgtagatta 111  Q
    |||||||||||| |||||||||||  |||||||||| |||||||| ||||| ||||||||||||    
T  47569683 gtaagatatatgaaaataagctagggtggtgcaaaagaaccatgcttttgtggaatgtagatta 47569746  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 47569859 - 47569908
Alignment:
Q  192 tttgattataaaaatacgcctttgattgtcttggcttgtgacatattctt 241  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| |||||    
T  47569859 tttgattatataaatacgcctatgattgtcttggcttgttacattttctt 47569908  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 8331981 - 8332023
Alignment:
Q  49 gtaagatatatggaaataagctagaatggtgcaaaacaaccat 91  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  8331981 gtaagatatatgaaaataagctaggatggtgcaaaagaaccat 8332023  T

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