View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_364 (Length: 250)
Name: NF10954A_low_364
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_364 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 53388248 - 53388425
Alignment:
| Q |
19 |
catcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgt |
118 |
Q |
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| T |
53388248 |
catcagaaaaagattcatctgaaggtattagtgagggaagtcccaaggaacaattatgtatgaaggatgatgacggtggaagtgaatctcggtcgcatgt |
53388347 |
T |
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| Q |
119 |
tgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaat |
196 |
Q |
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| T |
53388348 |
tgattctacgtcaagtgagagaacaaagcctacaatgctaccagatggattaatcaatgaggattgtagtcctgtaat |
53388425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 10597537 - 10597664
Alignment:
| Q |
19 |
catcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgt |
118 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10597537 |
catcagaaaaagattcatctgaaggtactagtgatggaagtcccaaggaacagttctgtatgaaggatgatgatggtagaagtgaatctcggtcgcatgt |
10597636 |
T |
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| Q |
119 |
tgattctgcatcaagtgagagagcaaag |
146 |
Q |
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| T |
10597637 |
tgattctgcatcaagtgagagaacaaag |
10597664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 10597666 - 10597800
Alignment:
| Q |
112 |
cgcatgttgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaattgctgctgatgcatt |
211 |
Q |
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| T |
10597666 |
cgcatgttgattctgcattaagtgagagaacaaagaccacaatgctaccaaatggattaatcaatgaggatagcagtcctgtaatggctgctgatgcatc |
10597765 |
T |
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| Q |
212 |
ggattccacaagtaattttcctggcaaaacggatt |
246 |
Q |
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| T |
10597766 |
ggattccacaagtgatcttgttgacaaaacggatt |
10597800 |
T |
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