View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_366 (Length: 250)
Name: NF10954A_low_366
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_366 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 46388031 - 46387821
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46388031 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
46387932 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46387931 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
46387832 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
46387831 |
ataaatccgat |
46387821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 37381569 - 37381779
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37381569 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
37381668 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37381669 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
37381768 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
37381769 |
ataaatccgat |
37381779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 11166975 - 11166765
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11166975 |
gagaagatgttgtggaaatcctattaatgccccagcctgattaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
11166876 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11166875 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
11166776 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
11166775 |
ataaatccgat |
11166765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 41767826 - 41768036
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41767826 |
gagaaaatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
41767925 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41767926 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
41768025 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
41768026 |
ataaatccgat |
41768036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 4297359 - 4297149
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4297359 |
gagaagatgttgtggaaatcctattaatgccccagtctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
4297260 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4297259 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttacatttgatgccaactaa |
4297160 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
4297159 |
ataaatccgat |
4297149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 7733705 - 7733531
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7733705 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
7733606 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
7733605 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaa |
7733531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 50985613 - 50985817
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50985613 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
50985712 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||| ||| | |||| | |||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50985713 |
aattaccacaaataa-----aatctgtc-tttaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
50985806 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
50985807 |
ataaatccgat |
50985817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 7698857 - 7699029
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7698857 |
gagaagatgttgtggaa-tcctattaatgccccagcctggttaattgacaaatcac-aaagtaagggtaaaatctgtctttaacttactttattcaacca |
7698954 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
7698955 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaa |
7699029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 46323177 - 46323051
Alignment:
| Q |
86 |
taagggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcat |
185 |
Q |
| |
|
|||||||||| |||||||| || ||||||| | ||| |||| ||| || ||||||| |||||||||| |||||||||| | ||||| |||| || || |
|
|
| T |
46323177 |
taagggtaaattttgtcttaaaattactttttctaactaaatgacctcacttaactactatgatgtcatttaactataaaaagcttatagtttgatttat |
46323078 |
T |
|
| Q |
186 |
tt-gctcttcataaagtcatttccatt |
211 |
Q |
| |
|
|| |||||||| ||||||| ||||||| |
|
|
| T |
46323077 |
tttgctcttcaaaaagtcagttccatt |
46323051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 44843340 - 44843130
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44843340 |
gagaagatgttgtggaaatcctattaatgccccaacctggttaattgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
44843241 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44843240 |
aattacaacaattaactaagatgatgtcatgtaactataaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
44843141 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
44843140 |
ataaatccgat |
44843130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 37741978 - 37742188
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |
|
|
| T |
37741978 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaaaggtaaaatctgtctttaacttactttattcaacta |
37742077 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||| |||| |
|
|
| T |
37742078 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaaatcattttcatttgatgccacctaa |
37742177 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
37742178 |
ataaatccgat |
37742188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 28130784 - 28130614
Alignment:
| Q |
66 |
taattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaactataaa |
165 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28130784 |
taattgacaaatcaccaaagtaagggtaaaatctcgctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaactacaaa |
28130685 |
T |
|
| Q |
166 |
taacttatggtttagttcatttgctcttcat-aaagtcatttccatttgatgccaactaaataaatccgat |
235 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130684 |
taactaatagtttagttcatttgctcttcataaaagtcatttccatttgatgccaactaaataaatccgat |
28130614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 28130848 - 28130785
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28130848 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaa |
28130785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 42375209 - 42374999
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42375209 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
42375110 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42375109 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
42375010 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
42375009 |
ataaatccgat |
42374999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 42403923 - 42403713
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42403923 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
42403824 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42403823 |
aattaccacaattaactaagatgatgtcatataactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
42403724 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
42403723 |
ataaatccgat |
42403713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 26066978 - 26066798
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26066978 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
26066879 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
26066878 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatt |
26066798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 12007187 - 12007398
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtcttt-aacttactttattcaacc |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
12007187 |
gagaagatgttgtggaaatcctattcatgccccaacctggttaattgacaaatcaccaaagtaatggtaaaatctgtcttttaacttactttattcaacc |
12007286 |
T |
|
| Q |
124 |
aaattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaacta |
223 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12007287 |
aaattaccacaattcactaagttgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgtcaacta |
12007386 |
T |
|
| Q |
224 |
aataaatccgat |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12007387 |
aataaatccgat |
12007398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 52275662 - 52275829
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaa-ttaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacc |
123 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||| |||||| || |||||||| || | ||||||||| |||||| || |||||||||| ||| |
|
|
| T |
52275662 |
gagaagatgttgtggaaaacctattattaccccaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaact |
52275761 |
T |
|
| Q |
124 |
aaattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctc |
191 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| || | | | ||||| ||||||||||||| |
|
|
| T |
52275762 |
aaatgaccacaattaactatgatgatgtcatgtaactactaaaagcatttggttgagttcatttgctc |
52275829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 15280061 - 15279965
Alignment:
| Q |
61 |
ctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgta |
157 |
Q |
| |
|
|||||| ||| |||||||| ||| ||| ||||||| ||||| ||| |||||||| |||||||||| |||| | ||||||| ||||||||||||| |
|
|
| T |
15280061 |
ctggtttattgacaaatcagcaagttaaaggtaaaagctgtctataaattactttaatcaaccaaataaccatgaataactaacatgatgtcatgta |
15279965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 54760446 - 54760575
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| | | |||| || ||||||||| || | ||||||||| ||||| | || |||||||||| ||| | |
|
|
| T |
54760446 |
gagaagatgttgtggaaaatctattattaccctatgccggttggttgacaaatcacataattgagggtaaaagttgtcctaaaattactttattgaacta |
54760545 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcat |
154 |
Q |
| |
|
||| |||| || |||||| ||||||||||| |
|
|
| T |
54760546 |
aatgaccataactaactacgatgatgtcat |
54760575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 13098292 - 13098502
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13098292 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
13098391 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13098392 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcattcccatttgatgccaactaa |
13098491 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
13098492 |
ataaatccgat |
13098502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 29609173 - 29608967
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29609173 |
gagaagatgttgtggaaatcctattaatgccccagcctagttaattgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
29609074 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29609073 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaacaaa |
29608974 |
T |
|
| Q |
225 |
ataaatc |
231 |
Q |
| |
|
||||||| |
|
|
| T |
29608973 |
ataaatc |
29608967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 36040831 - 36040624
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36040831 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
36040732 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36040731 |
aattaccacaattaactaagatgatgtcatgtaactacaaataac---tagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
36040635 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
36040634 |
ataaatccgat |
36040624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 14198608 - 14198746
Alignment:
| Q |
86 |
taagggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcat |
185 |
Q |
| |
|
|||||||||| |||||||| || ||||||| | ||| |||| ||| || ||||||| |||||||||| |||||||||| | ||||| |||| || || |
|
|
| T |
14198608 |
taagggtaaattttgtcttaaaattactttttctaactaaatgacctcacttaactactatgatgtcatttaactataaaaagcttatagtttgatttat |
14198707 |
T |
|
| Q |
186 |
tt-gctcttcataaagtcatttccatttgatgccaacta |
223 |
Q |
| |
|
|| |||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
14198708 |
tttgctcttcaaaaagtcagttccattacatgccaacta |
14198746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 54959981 - 54960052
Alignment:
| Q |
90 |
ggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaacta |
161 |
Q |
| |
|
||||||| |||||| || |||||||||| || |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
54959981 |
ggtaaaagttgtctaaaaattactttattgtactaaatgaccacaattaactatgatgatgtcatgtaacta |
54960052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 20407715 - 20407504
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20407715 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
20407616 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcat-aaagtcatttccatttgatgccaacta |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20407615 |
aattaccacaattaaccaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaaagtcatttccatttgatgccaacta |
20407516 |
T |
|
| Q |
224 |
aataaatccgat |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20407515 |
aataaatccgat |
20407504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 46373539 - 46373333
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
46373539 |
gagaagatgttgtggaaatcctattaatgccccaacctggttaattgacaaatcaccaaag----ggtaaaatctgtctttaacttactttattcaaaca |
46373444 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46373443 |
aattaccacaattaactaagatgatgtcatgtaactacaaataactaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaa |
46373344 |
T |
|
| Q |
225 |
ataaatccgat |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
46373343 |
ataaatccgat |
46373333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 29054707 - 29054603
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29054707 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaacca |
29054608 |
T |
|
| Q |
125 |
aatta |
129 |
Q |
| |
|
||||| |
|
|
| T |
29054607 |
aatta |
29054603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 22883021 - 22882938
Alignment:
| Q |
109 |
ttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctct |
192 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| |||||||||||||||||| || | | | |||||||||| ||||||||| |
|
|
| T |
22883021 |
ttactttattgaactaaatgaccacaattaactatgatgatgtcatgtaactactaaaagcatttggtttagtttatttgctct |
22882938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 46742720 - 46742582
Alignment:
| Q |
86 |
taagggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtcatgtaactataaataacttatggttt-agttca |
184 |
Q |
| |
|
|||||||||| ||||||| || ||||||| | ||| |||| ||| || ||||||| || ||||||| |||||||||| | ||||| |||| | || |
|
|
| T |
46742720 |
taagggtaaattttgtctaaaaattactttttctaactaaatgacctcacttaactactattatgtcatttaactataaaaagcttatagtttgattttt |
46742621 |
T |
|
| Q |
185 |
tttgctcttcataaagtcatttccatttgatgccaacta |
223 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
46742620 |
tttgctcttcaaaaagtcagttccattacatgccaacta |
46742582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 18273226 - 18273019
Alignment:
| Q |
28 |
aagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaat |
127 |
Q |
| |
|
|||||||||||||||| ||||||||| || || ||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
18273226 |
aagatgttgtggaaattctattaatgtcctggcttggttaattgacaaatcatcaaagtaagggtaaaatctgtctttaatttactttattcaaccaaat |
18273127 |
T |
|
| Q |
128 |
taccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctcttcataaagtcatttccatttgatgccaactaaata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18273126 |
taccacaattaactaagatgatgtcatgtaactataaagaattaatagtttagttcatttgctcttcataaagtcatttccatttgatgccaactaaata |
18273027 |
T |
|
| Q |
228 |
aatccgat |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
18273026 |
aatccgat |
18273019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 5325884 - 5326051
Alignment:
| Q |
25 |
gagaagatgttgtggaaatcctattaatgccccagcctggttaattaacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaacca |
124 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| | | |||| || ||||||||| || | ||||||||| ||||| | || |||||||||| ||| | |
|
|
| T |
5325884 |
gagaagatgttgtggaaaatctattattaccctatgccggttggttgacaaatcacataattgagggtaaaagttgtcctaaaattactttattgaacta |
5325983 |
T |
|
| Q |
125 |
aattaccacaattaactaagatgatgtcatgtaactataaataacttatggtttagttcatttgctct |
192 |
Q |
| |
|
||| |||| || |||||| ||||||||||| ||||||| || | | | |||||| ||| ||||||||| |
|
|
| T |
5325984 |
aatgaccataactaactacgatgatgtcatataactattaaaagcatttggtttggtttatttgctct |
5326051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University