View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_369 (Length: 250)

Name: NF10954A_low_369
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_369
NF10954A_low_369
[»] chr1 (12 HSPs)
chr1 (68-225)||(41126196-41126353)
chr1 (125-221)||(26602558-26602655)
chr1 (52-159)||(32882568-32882675)
chr1 (42-225)||(38544461-38544642)
chr1 (41-159)||(38548849-38548964)
chr1 (67-160)||(16148992-16149084)
chr1 (21-92)||(10785299-10785370)
chr1 (20-59)||(41126348-41126387)
chr1 (40-92)||(24659119-24659170)
chr1 (25-92)||(7857829-7857895)
chr1 (176-225)||(16577571-16577620)
chr1 (135-186)||(37200386-37200438)
[»] chr2 (14 HSPs)
chr2 (20-225)||(16952089-16952294)
chr2 (20-225)||(17022754-17022959)
chr2 (20-192)||(17060093-17060265)
chr2 (23-159)||(12342992-12343126)
chr2 (21-143)||(10173368-10173488)
chr2 (163-225)||(20572347-20572409)
chr2 (25-92)||(14106361-14106427)
chr2 (25-154)||(387351-387478)
chr2 (21-107)||(20572244-20572328)
chr2 (17-90)||(14405366-14405439)
chr2 (166-214)||(30966022-30966070)
chr2 (25-92)||(7460852-7460918)
chr2 (40-92)||(7874482-7874532)
chr2 (132-215)||(12257294-12257378)
[»] chr7 (11 HSPs)
chr7 (21-225)||(23983377-23983580)
chr7 (21-103)||(3478522-3478602)
chr7 (132-216)||(28534243-28534328)
chr7 (21-159)||(24324570-24324708)
chr7 (20-122)||(9107316-9107416)
chr7 (60-159)||(1321004-1321104)
chr7 (43-193)||(9427857-9428006)
chr7 (21-93)||(6716575-6716647)
chr7 (40-92)||(34390153-34390204)
chr7 (25-91)||(35745662-35745727)
chr7 (21-107)||(8745323-8745411)
[»] chr8 (7 HSPs)
chr8 (20-159)||(10248339-10248479)
chr8 (138-225)||(25184865-25184953)
chr8 (67-172)||(12197834-12197939)
chr8 (67-172)||(12442262-12442367)
chr8 (133-221)||(15906952-15907041)
chr8 (30-107)||(17720546-17720622)
chr8 (52-92)||(35816085-35816124)
[»] chr5 (6 HSPs)
chr5 (20-183)||(21398067-21398231)
chr5 (20-159)||(26045736-26045876)
chr5 (132-228)||(39183907-39184003)
chr5 (21-90)||(13954090-13954159)
chr5 (56-154)||(7161793-7161890)
chr5 (21-159)||(14302216-14302356)
[»] chr4 (9 HSPs)
chr4 (20-93)||(19673269-19673341)
chr4 (20-107)||(12296330-12296416)
chr4 (20-82)||(19815071-19815132)
chr4 (68-159)||(41117740-41117829)
chr4 (22-92)||(35341179-35341247)
chr4 (20-107)||(16832844-16832933)
chr4 (163-221)||(41231497-41231555)
chr4 (20-86)||(25753341-25753409)
chr4 (67-107)||(48098552-48098592)
[»] scaffold1613 (1 HSPs)
scaffold1613 (42-225)||(740-921)
[»] scaffold0063 (1 HSPs)
scaffold0063 (21-155)||(58297-58433)
[»] chr3 (5 HSPs)
chr3 (134-225)||(27399228-27399320)
chr3 (21-86)||(39021122-39021187)
chr3 (25-92)||(23328189-23328255)
chr3 (21-92)||(4170914-4170987)
chr3 (163-225)||(45354653-45354715)
[»] chr6 (4 HSPs)
chr6 (21-107)||(32935166-32935250)
chr6 (163-225)||(33968342-33968404)
chr6 (67-154)||(20701578-20701665)
chr6 (125-159)||(15120375-15120409)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 41126353 - 41126196
Alignment:
Q  68 ggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgtattttataggtgt 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  41126353 ggggtgagtagtgacgatgggtggtgatggatatcgttttacagtggtttgttttcgtgaatgcgtctgttttaggtggtgatatgtattttgtaggtgt 41126254  T
Q  168 tgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41126253 tgtcctcttgggtgttgaaggtagggtatggctatgtgttgtgtgtaggggtgtcttt 41126196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 26602655 - 26602558
Alignment:
Q  125 tgaatgcgtctgttttaggtggtgatgtgtatttt-ataggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgt 221  Q
    |||||| |||||| |||||||||||||| |||||| || ||||||||||||  || ||||||||||||||  |||||| |||||||||||||||||||    
T  26602655 tgaatgagtctgtgttaggtggtgatgtttattttcatgggtgttgtcctcggggttgttgaaggtagggtttggctaggtgttgtgtgtaggggtgt 26602558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 32882568 - 32882675
Alignment:
Q  52 gaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgt-tttacaatggtttgttttcatgaatgcgtctgttttaggtggtgat 150  Q
    ||||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||| | | | |||||| |||| | ||| |||||||| ||||||    
T  32882568 gaggggtgttcgttggggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagt-gctcgttttcgtgaaggagtcagttttaggcggtgat 32882666  T
Q  151 gtgtatttt 159  Q
    || ||||||    
T  32882667 gtatatttt 32882675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 38544642 - 38544461
Alignment:
Q  42 gtttcatttagaggggtgtt-ctttggggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgtttt 140  Q
    |||||||||||||||||||| | |||||   ||||||||||||||| ||||| ||| |||||||||| || || |    || | |||| | |||||||||    
T  38544642 gtttcatttagaggggtgttacgttggga--tgagtagtgacgatgagtggttatggatatcgttttccagtgatca--ttccgtgaaagagtctgtttt 38544547  T
Q  141 aggtggtgatgtgtattttatagg-tgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    |||||||||||| ||||||   |  |||||||||| ||||||||||||||| |   |||||| ||||||||||||||| |||||||    
T  38544546 aggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgtcttt 38544461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 38548964 - 38548849
Alignment:
Q  41 agtttcatttagaggggtgtt-ctttggggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgttt 139  Q
    ||||| ||||||||||||||| |||||||   ||||||||||||||||||||| |||||||||||||| || ||   |  |||| |||| | ||||||||    
T  38548964 agtttgatttagaggggtgttactttggga--tgagtagtgacgatgggtggttatgaatatcgtttttcagtg--atcgtttcgtgaaagagtctgttt 38548869  T
Q  140 taggtggtgatgtgtatttt 159  Q
    ||||||||||||| ||||||    
T  38548868 taggtggtgatgtttatttt 38548849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 16148992 - 16149084
Alignment:
Q  67 gggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgtatttta 160  Q
    |||||||||||||||||||||||| |  || |||||||||| || | ||  |||| |||||| | |||||||||||||||||| ||||||||||    
T  16148992 gggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtc-gtttacatgaaggtgtctgttttaggtggtgacgtgtatttta 16149084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 10785370 - 10785299
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    ||||||| | |||||||||||||||  ||| ||||||||||  ||| ||| |||||||||||||||||||||    
T  10785370 ctttggtatcgaggactgagagtttatttttgaggggtgtttcttgcgggatgagtagtgacgatgggtggt 10785299  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 41126387 - 41126348
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtg 59  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  41126387 actttggtgatgaggactgagagtttcatttagaggggtg 41126348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 24659119 - 24659170
Alignment:
Q  40 gagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||| |||| |||||||||| ||||||| ||||||||||||||||||||||    
T  24659119 gagttttattttgaggggtgttatttgggg-gtgagtagtgacgatgggtggt 24659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 7857829 - 7857895
Alignment:
Q  25 ggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||||| | ||| |||||| |||| |||||||||||| | |||||||||||||| |||||||||||    
T  7857829 ggtgttgaagtctgggagttttattttgaggggtgttctat-gggggtgagtagtggcgatgggtggt 7857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 16577571 - 16577620
Alignment:
Q  176 tgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    ||||||||||| |||||| ||| |||  ||||||||||||||||||||||    
T  16577571 tgggtgttgaaagtagggtatgactagatgttgtgtgtaggggtgtcttt 16577620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 37200386 - 37200438
Alignment:
Q  135 tgttttaggtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaa 186  Q
    |||||||||||||||||| ||||||| | |||||||||||| || ||||||||    
T  37200386 tgttttaggtggtgatgtttattttagtgggtgttgtcctcatgagtgttgaa 37200438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 16952294 - 16952089
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttta-caatggtttg 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||  || | |||||    
T  16952294 actttggtgttgaggactgggagtttcatttagaggggtgttctttggggg-tgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 16952196  T
Q  119 ttttcatgaatgcgtctgttttaggtggtgatgtgtattttataggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtagggg 218  Q
    ||||| |||| |||||||||||| |||||||||| |||||| | ||||||||| || |||||||||||||||||  ||| ||| |||||||||||||| |    
T  16952195 ttttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 16952096  T
Q  219 tgtcttt 225  Q
    |||||||    
T  16952095 tgtcttt 16952089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 17022959 - 17022754
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttta-caatggtttg 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||  || | |||||    
T  17022959 actttggtgttgaggactgggagtttcatttagaggggtgttctttggggg-tgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 17022861  T
Q  119 ttttcatgaatgcgtctgttttaggtggtgatgtgtattttataggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtagggg 218  Q
    ||||| |||| |||||||||||| |||||||||| |||||| | ||||||||| || |||||||||||||||||  ||| ||| |||||||||||||| |    
T  17022860 ttttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 17022761  T
Q  219 tgtcttt 225  Q
    |||||||    
T  17022760 tgtcttt 17022754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 17060265 - 17060093
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttta-caatggtttg 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||  || | |||||    
T  17060265 actttggtgttgaggactgggagtttcatttagaggggtgttctttggggg-tgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 17060167  T
Q  119 ttttcatgaatgcgtctgttttaggtggtgatgtgtattttataggtgttgtcctcttgggtgttgaaggtagg 192  Q
    ||||| |||| |||||||||||| |||||||||| |||||| | ||||||||| || |||||||||||||||||    
T  17060166 ttttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtagg 17060093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 12342992 - 12343126
Alignment:
Q  23 ttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcg-ttttacaatggtttgttt 121  Q
    |||||||||||||||| ||||||  ||| ||||||||||  ||||||||||||||||||||||| |||||  || |||||| |||||||  || | ||||    
T  12342992 ttggtgttgaggactgggagtttatttttgaggggtgtttcttggggggtgagtagtgacgatgagtggt--tggatatcgtttttacagagg-tcgttt 12343088  T
Q  122 tcatgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
    || |||| | |||||||||||||||||| |||||||||    
T  12343089 tcgtgaaggagtctgttttaggtggtgacgtgtatttt 12343126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 10173488 - 10173368
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttt-acaatggtttgt 119  Q
    ||||||||||||||||||||||||| |||| |||| || ||||||||||  ||||||||||||||| |||||| || |||||||||| ||| | ||  ||    
T  10173488 ctttggtgttgaggactgagagtttaattttgaggagtattctttgggg--tgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtc-gt 10173392  T
Q  120 tttcatgaatgcgtctgttttagg 143  Q
    |||||||||  |||||||||||||    
T  10173391 tttcatgaagacgtctgttttagg 10173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 20572347 - 20572409
Alignment:
Q  163 ggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    |||||||||||| |||||||||||||||||| |||  || |||||||||||||||||||||||    
T  20572347 ggtgttgtcctcatgggtgttgaaggtagggtatgagtaagtgttgtgtgtaggggtgtcttt 20572409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 14106427 - 14106361
Alignment:
Q  25 ggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||||| | |||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||    
T  14106427 ggtgttgaagtctgagagttttattttgaggggtgttctttg-ggggtgagtagtgacgatgagtggt 14106361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 387351 - 387478
Alignment:
Q  25 ggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgt-tttacaatggtttgttttc 123  Q
    ||||||| || ||| |||||| |||| ||||| ||||||||||||| ||| ||||||||||||| |||| ||||| | || ||||||||| || |||||     
T  387351 ggtgttggggtctgggagttttattttgaggg-tgttctttggggg-tgaatagtgacgatgggcggtggtgaattttgtgtttacaatgctt-gttttt 387447  T
Q  124 atgaatgcgtctgttttaggtggtgatgtgt 154  Q
     |||| | |||||||||||||||||||||||    
T  387448 gtgaaggagtctgttttaggtggtgatgtgt 387478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 20572244 - 20572328
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||  | ||||||||||| |||| |||||| ||| ||||||||||    
T  20572244 ctttagtgatgaggaatgagagtttcatttagaggggtgttcttt-tgaggtgagtagtggcgat-ggtggttatggatatcgtttt 20572328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 14405366 - 14405439
Alignment:
Q  17 tcgactttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtg 90  Q
    ||||||| |||||||| | ||| |||||| |||| ||||| |||||||| |||||||||||||||| |||||||    
T  14405366 tcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgacaatgggtg 14405439  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 30966070 - 30966022
Alignment:
Q  166 gttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgta 214  Q
    ||||||||||||| ||||||||||| ||| ||| |||||||||||||||    
T  30966070 gttgtcctcttggatgttgaaggtatggcttggttatgtgttgtgtgta 30966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 7460852 - 7460918
Alignment:
Q  25 ggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||||| | ||| |||||| |||| |||||||||||||| |||| ||||||||||||||| |||||    
T  7460852 ggtgttgaagtctgggagttttattttgaggggtgttcttt-ggggttgagtagtgacgatgtgtggt 7460918  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 7874482 - 7874532
Alignment:
Q  40 gagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||| |||| ||||| ||||||||||||  |||||||||||||||||||||    
T  7874482 gagttttattttgagggatgttctttgggg--tgagtagtgacgatgggtggt 7874532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 12257378 - 12257294
Alignment:
Q  132 gtctgttttaggtggtgatgtgtatttt-ataggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtag 215  Q
    |||| ||||| |||||||||| |||||| ||||||||||||  | || ||||||  |||||||| ||| || |||||||||||||    
T  12257378 gtctcttttaagtggtgatgtttattttgataggtgttgtcagcatgagtgttgttggtagggcgtggttaggtgttgtgtgtag 12257294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 23983377 - 23983580
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgtt 120  Q
    ||||| || ||||||| |||| |||||||||||| ||| |||||| |||| |||||||||| ||||||| || ||| |||||||||| || ||||| |||    
T  23983377 ctttgatgatgaggaccgagaatttcatttagagcggtcttcttttgggg-tgagtagtgatgatgggtagttatgtatatcgtttttcagtggtt-gtt 23983474  T
Q  121 ttcatgaatgcgtctgttttaggtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggt 219  Q
    ||| |||||| ||||||||||||||||| ||| ||||||  | |||||||||||| || |||||||||||| || ||| ||| ||||||||||||||| |    
T  23983475 ttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttgtcctcatgtgtgttgaaggtaaggtatgactaggtgttgtgtgtagggat 23983574  T
Q  220 gtcttt 225  Q
    ||||||    
T  23983575 gtcttt 23983580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 3478522 - 3478602
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcg 103  Q
    |||||||||||||||||| |||||| |||| |||| |||||||||  ||||||||||||||||| || |||||||| ||||||    
T  3478522 ctttggtgttgaggactgggagtttaattttgaggagtgttcttt--ggggtgagtagtgacgacggttggtgatggatatcg 3478602  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 28534328 - 28534243
Alignment:
Q  132 gtctgttttaggtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtagg 216  Q
    ||||||||||||||||||||| ||||||  | ||||||||||||  |||||||||||||||||  ||||||  |||||||||||||    
T  28534328 gtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgtgtagg 28534243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 24324708 - 24324570
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctt--tggggggtgagtagtgacgatgggtggtgatgaatatcgtt-ttacaatggttt 117  Q
    |||||||||| ||||| |||||||| |||| |||||||||| ||  |  |||||||||||||||||| ||||||  || |||||||| ||||||||||      
T  24324708 ctttggtgttcaggacggagagttttattttgaggggtgtttttctttaggggtgagtagtgacgat-ggtggt--tggatatcgttcttacaatggtcg 24324612  T
Q  118 gttttcatgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
     ||||| |||| | |||||||||| ||||||| |||||||||    
T  24324611 tttttcgtgaaggagtctgttttaagtggtgacgtgtatttt 24324570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 9107316 - 9107416
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgt 119  Q
    ||||||||| |||||| || | |||||||||||||||| ||| ||| |||  ||||||||| ||||||||||| ||| |||||||||| ||||||| |||    
T  9107316 actttggtgatgagga-tgggtgtttcatttagaggggagttattttggga-tgagtagtggcgatgggtggttatggatatcgttttccaatggtctgt 9107413  T
Q  120 ttt 122  Q
    |||    
T  9107414 ttt 9107416  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 1321004 - 1321104
Alignment:
Q  60 ttctttggggggtgagtagtgacgatgggtggtgatgaatatcg-ttttacaatggtttgttttcatg-aatgcgtctgttttaggtggtgatgtgtatt 157  Q
    ||||||||||||||||||||||||||| |||||  |  |||||| ||||||| ||| ||| |||| || || | ||||||||||||||||||||||||||    
T  1321004 ttctttggggggtgagtagtgacgatgagtggtattagatatcgtttttacagtgg-ttgctttcgtgaaaggggtctgttttaggtggtgatgtgtatt 1321102  T
Q  158 tt 159  Q
    ||    
T  1321103 tt 1321104  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 9428006 - 9427857
Alignment:
Q  43 tttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgttttag 142  Q
    |||||||||||||| || | ||| |||  ||||||||||||| ||||||| ||| ||||| ||||  | ||||| || ||| |||| |  | ||||||||    
T  9428006 tttcatttagagggatgctatttaggga-tgagtagtgacgacgggtggttatggatatcattttttagtggtt-gtcttcgtgaaagaatttgttttag 9427909  T
Q  143 gtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaaggtaggg 193  Q
    || ||||||| ||||||  |||||||||||||| |||||||| |||||||||    
T  9427908 gtagtgatgtttattttggtaggtgttgtcctcgtgggtgttaaaggtaggg 9427857  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 6716647 - 6716575
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtg 93  Q
    ||||||||||||||| || |||||| |||| | ||||||||   | |||||||||||||||| ||||||||||    
T  6716647 ctttggtgttgaggaatgggagtttaattttgtggggtgtttcgttgggggtgagtagtgacaatgggtggtg 6716575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 34390153 - 34390204
Alignment:
Q  40 gagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||| |||| |||||||||||||| |||| |||||||||||||||||||||    
T  34390153 gagttttattttgaggggtgttcttt-ggggatgagtagtgacgatgggtggt 34390204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 35745727 - 35745662
Alignment:
Q  25 ggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtgg 91  Q
    |||||||| | ||||  |||| |||| ||| ||||||||||||||| ||||||||||||||||||||    
T  35745727 ggtgttgaagtctgactgttttattttgagaggtgttctttggggg-tgagtagtgacgatgggtgg 35745662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 8745323 - 8745411
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctt--tggggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    |||||||||| | ||||| |||||| |||| |||||||||| ||  | |||||||||||||||||| || ||||| || |||| |||||    
T  8745323 ctttggtgttcaagactgggagtttaattttgaggggtgtttttctttgggggtgagtagtgacgaaggatggtgttggatattgtttt 8745411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 10248479 - 10248339
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgtt-ctttggggggtgagtagtgacgatgggtggtgatgaatatcg-ttttacaatggttt 117  Q
    |||||||||||||||||| ||||||| |||| || ||||||| | ||||||||||||||||||||||||||| ||  | || ||| ||||||| ||| |     
T  10248479 actttggtgttgaggacttagagtttaattttgacgggtgtttcgttggggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtgg-tc 10248381  T
Q  118 gttttcatgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
    |||||| |||| | || ||||||||||||||| |||||||||    
T  10248380 gttttcgtgaaggagtttgttttaggtggtgacgtgtatttt 10248339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 25184953 - 25184865
Alignment:
Q  138 tttaggtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    ||||||||||||||| ||||||  | |||||||||||| || |||||||||||||||| |||||| || ||||||||| || |||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtcctcatgagtgttgaaggtagggcttggctaggtattgtgtgtatggatgtcttt 25184865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 12197939 - 12197834
Alignment:
Q  67 gggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgtattttataggtg 166  Q
    |||||||||||||||||| |||||||| || ||||||||||   |  | | || |||||||| ||||||||| |||||||||| |||||||||   ||||    
T  12197939 gggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttttgtggtg 12197840  T
Q  167 ttgtcc 172  Q
    ||||||    
T  12197839 ttgtcc 12197834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 12442367 - 12442262
Alignment:
Q  67 gggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgtattttataggtg 166  Q
    |||||||||||||||||| |||||||| || ||||||||||   |  | | || |||||||| ||||||||| |||||||||| |||||||||   ||||    
T  12442367 gggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttttgtggtg 12442268  T
Q  167 ttgtcc 172  Q
    ||||||    
T  12442267 ttgtcc 12442262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 15906952 - 15907041
Alignment:
Q  133 tctgttttaggtggtgatgtgtattt-tataggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgt 221  Q
    |||||||| ||||||||||| ||| | | | ||||| |||||| ||||||||||||||||||   ||||| |||||||||||||||||||    
T  15906952 tctgtttttggtggtgatgtctatctctgtgggtgtggtcctcatgggtgttgaaggtagggttgggctaggtgttgtgtgtaggggtgt 15907041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 17720622 - 17720546
Alignment:
Q  30 tgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    ||||||| ||| ||||||||||||||||| || |||  ||||||||||||||||||  ||||| ||| ||||| ||||    
T  17720622 tgaggacggagtgtttcatttagaggggt-ttatttttggggtgagtagtgacgatatgtggttatgtatatcttttt 17720546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 35816124 - 35816085
Alignment:
Q  52 gaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  35816124 gaggggtgttctttggggg-tgagtagtgatgatgggtggt 35816085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 21398231 - 21398067
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcg-ttttacaatggtttg 118  Q
    ||||||||||||||||||  ||||||  ||||||||| ||||   | ||||||||||| ||| |||||||||||  | |||||| |||||||| || |||    
T  21398231 actttggtgttgaggactaggagtttattttagagggttgtttcgttgggggtgagtactgatgatgggtggtgcgggatatcgtttttacaaagg-ttg 21398133  T
Q  119 ttttcatgaatgcgtctgttttaggtggtgatgtgta-ttttataggtgttgtcctcttgggtgtt 183  Q
    ||||| |||| ||||||||||||| |||||| ||||| |||| || |||||||||||  |||||||    
T  21398132 ttttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgtt 21398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 26045876 - 26045736
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctt-tggggggtgagtagtgacgatgggtggtgatgaatatcg-ttttacaatggttt 117  Q
    ||||||||||| |||| ||||||||| |||| |||||||||| || |  ||||||||||||||||||||| |||| || || ||| ||||||  ||| |     
T  26045876 actttggtgtttaggattgagagtttaattttgaggggtgtttttctttggggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtgg-tc 26045778  T
Q  118 gttttcatgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
     ||||||||||   |||||||||||||||||| ||| |||||    
T  26045777 attttcatgaagaagtctgttttaggtggtgacgtgaatttt 26045736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 39184003 - 39183907
Alignment:
Q  132 gtctgttttaggtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtctttatg 228  Q
    ||||||||||||||||||| | ||||||| | ||||||||||||  |||||||||||||||||  || ||| ||||| || | |||||||||||||||    
T  39184003 gtctgttttaggtggtgatctttattttagtgggtgttgtcctcaagggtgttgaaggtaggg-ttgactaagtgttatgaggaggggtgtctttatg 39183907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 13954159 - 13954090
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtg 90  Q
    |||||| ||||||||||| |||||| |||||||||||||||   | ||||| |||| |||||||||||||    
T  13954159 ctttggcgttgaggactgggagtttaatttagaggggtgtttcgttgggggagagttgtgacgatgggtg 13954090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 7161890 - 7161793
Alignment:
Q  56 ggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgt-tttacaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgt 154  Q
    ||||||||||||||| |||||||||||| ||||||||| || | ||||| |||||| | | |||||||  |||| | ||||||||||||| |||||||||    
T  7161890 ggtgttctttggggg-tgagtagtgacgttgggtggtggtggaaatcgtgtttacagt-gcttgtttttgtgaaggagtctgttttaggtagtgatgtgt 7161793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 14302356 - 14302216
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctt--tggggggtgagtagtgacgatgggtggtgatgaatatcgtttt-acaatggttt 117  Q
    |||||||||| |||| || |||||| |||| ||||||| || ||  | |||| |||||||||||||  ||||||| || |||||||||| ||| ||||      
T  14302356 ctttggtgttcaggagtgggagtttaattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtc- 14302258  T
Q  118 gttttcatgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
    ||||||  ||| |  ||||||||||||||||| |||||||||    
T  14302257 gttttcgcgaaggaatctgttttaggtggtgacgtgtatttt 14302216  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 19673269 - 19673341
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtg 93  Q
    |||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||| || |||||    
T  19673269 actttggtgttgaggactgagagtttaattttgaggagtgttcttt-gggggtgagtagtgacgacggatggtg 19673341  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 12296330 - 12296416
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    |||| |||| ||||||| ||| |||||||||||||||||||| |||  ||| ||||||||| ||||||||||| ||| ||||||||||    
T  12296330 acttaggtgatgaggacggagtgtttcatttagaggggtgttattt-tgggatgagtagtggcgatgggtggttatggatatcgtttt 12296416  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 19815132 - 19815071
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgac 82  Q
    |||||||||||||||||||||||||| || | |||  |||||||||| |||||||||||||||    
T  19815132 actttggtgttgaggactgagagtttaatcttgagaagtgttctttg-ggggtgagtagtgac 19815071  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 41117829 - 41117740
Alignment:
Q  68 ggggtgagtagtgacgatgggtggtgatgaatatcgtttt-acaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
    |||||||||| ||||||||||||||  || |||||||||| |||| |||| |||||| || ||| ||||||| ||||||||||| ||||||||    
T  41117829 ggggtgagtaatgacgatgggtggt--tggatatcgtttttacaacggtt-gttttcgtgcatgagtctgttctaggtggtgatatgtatttt 41117740  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 35341247 - 35341179
Alignment:
Q  22 tttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    ||||||||||| |  || |||||| |||| |||||||||||| |||||  |||||||||||||||||||||    
T  35341247 tttggtgttgaagtttgggagttttattttgaggggtgttctctgggg--tgagtagtgacgatgggtggt 35341179  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 16832933 - 16832844
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctttgg--ggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    ||||||||||| | ||||| |||||| |||| |||||||||| |||    ||||||||||||||||| |||||||| || ||||| ||||    
T  16832933 actttggtgttcaagactgtgagtttaattttgaggggtgttttttctttggggtgagtagtgacgacgggtggtgttggatatcttttt 16832844  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 41231555 - 41231497
Alignment:
Q  163 ggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgt 221  Q
    |||||||||||| |||||||| |||||||||| ||| || |||||| ||||| ||||||    
T  41231555 ggtgttgtcctcatgggtgttaaaggtagggcttggttaggtgttgggtgtatgggtgt 41231497  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 25753341 - 25753409
Alignment:
Q  20 actttggtgttgaggactgagagtttcatttagaggggtgttctt--tggggggtgagtagtgacgatg 86  Q
    |||||| |||| |||||||| ||||| |||| |||||||||| ||  | ||||||||||||||||||||    
T  25753341 actttgatgttcaggactgaaagtttaattttgaggggtgtttttctttgggggtgagtagtgacgatg 25753409  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 48098552 - 48098592
Alignment:
Q  67 gggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    |||||||||||||||||| |||| |||||| ||||||||||    
T  48098552 gggggtgagtagtgacgacgggttgtgatggatatcgtttt 48098592  T

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Target: scaffold1613 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 921 - 740
Alignment:
Q  42 gtttcatttagaggggtgtt-ctttggggggtgagtagtgacgatgggtggtgatgaatatcgttttacaatggtttgttttcatgaatgcgtctgtttt 140  Q
    |||||||||||||||||||| | |||||   ||||||||||||||| ||||| ||| |||||||||| || || |    || | |||| | |||||||||    
T  921 gtttcatttagaggggtgttacgttggga--tgagtagtgacgatgagtggttatggatatcgttttccagtgatca--ttccgtgaaagagtctgtttt 826  T
Q  141 aggtggtgatgtgtattttatagg-tgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    |||||||||||| ||||||   |  |||||||||| ||||||||||||||| |   |||||| ||||||||||||||| |||||||    
T  825 aggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgtcttt 740  T

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Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 58297 - 58433
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctt--tggggggtgagtagtgacgatgggtggtgatgaatatc-gttttacaatggttt 117  Q
    ||||||||||  ||||||||||||| |||| |||| ||||| ||  | ||| |||||||||||||| |||| ||| || ||||| |||||||||||||      
T  58297 ctttggtgttcgggactgagagtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtc- 58395  T
Q  118 gttttcatgaatgcgtctgttttaggtggtgatgtgta 155  Q
    |||||| |||| | ||||||||| ||||||||||||||    
T  58396 gttttcgtgaaggagtctgtttttggtggtgatgtgta 58433  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 27399228 - 27399320
Alignment:
Q  134 ctgttttaggtggtgatgtgtatttta-taggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    |||||||||||| |||||| ||||||  | |||||||||||| |||||||||||||| | || |||||| |||||||||||| | ||||||||    
T  27399228 ctgttttaggtgatgatgtttattttggtgggtgttgtcctcatgggtgttgaaggtcgagcttggctaagtgttgtgtgtaagtgtgtcttt 27399320  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 39021187 - 39021122
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatg 86  Q
    |||||||||||||||||||||||||||||| || | |||||  || ||| ||||||||||||||||    
T  39021187 ctttggtgttgaggactgagagtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 23328255 - 23328189
Alignment:
Q  25 ggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggt 92  Q
    |||||||| | ||| |||||| |||| ||| ||||||||||||||| |||||||||||||||||||||    
T  23328255 ggtgttgaagtctgggagttttattttgagtggtgttctttggggg-tgagtagtgacgatgggtggt 23328189  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 4170914 - 4170987
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttg--gggggtgagtagtgacgatgggtggt 92  Q
    |||||||||| |||||||||||||| | || |||||||||| || |  ||||||||||||||||||||| ||||    
T  4170914 ctttggtgttaaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatggatggt 4170987  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 45354715 - 45354653
Alignment:
Q  163 ggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    |||||||||||  | ||||||||||||||||  |||||| ||| |||||||||||||||||||    
T  45354715 ggtgttgtcctaataggtgttgaaggtagggtttggctaggtgctgtgtgtaggggtgtcttt 45354653  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 32935250 - 32935166
Alignment:
Q  21 ctttggtgttgaggactgagagtttcatttagaggggtgttctttggggggtgagtagtgacgatgggtggtgatgaatatcgtttt 107  Q
    |||||||| |||| |||| ||||||||||||||||| |||| |||  ||||| |||||||| |||||||||| ||| ||||||||||    
T  32935250 ctttggtgatgagcactgtgagtttcatttagagggatgtttttt--ggggtcagtagtgatgatgggtggttatgtatatcgtttt 32935166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 33968404 - 33968342
Alignment:
Q  163 ggtgttgtcctcttgggtgttgaaggtagggcatggctatgtgttgtgtgtaggggtgtcttt 225  Q
    ||||||||||||  |||||||||||||||||  |||||| ||| |||||||||||||||||||    
T  33968404 ggtgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgtaggggtgtcttt 33968342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 20701665 - 20701578
Alignment:
Q  67 gggggtgagtagtgacgatgggtggtgatgaatatcg-ttttacaatggtttgttttcatgaatgcgtctgttttaggtggtgatgtgt 154  Q
    ||||||||||||||||||||||| ||  || |||||| ||||||| ||| ||| |||| |||||| ||||||| |||||||||| ||||    
T  20701665 gggggtgagtagtgacgatgggtagtattggatatcgtttttacagtgg-ttgctttcgtgaatgggtctgttataggtggtgaagtgt 20701578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 15120409 - 15120375
Alignment:
Q  125 tgaatgcgtctgttttaggtggtgatgtgtatttt 159  Q
    |||||| ||||||||||||||||||||||||||||    
T  15120409 tgaatgagtctgttttaggtggtgatgtgtatttt 15120375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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