View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_370 (Length: 250)
Name: NF10954A_low_370
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_370 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 19450 - 19673
Alignment:
| Q |
17 |
gaaaatggcgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttaccatgatagtg |
116 |
Q |
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| T |
19450 |
gaaaatggtgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttaccatgatagtg |
19549 |
T |
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| Q |
117 |
tttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgaaattactgatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19550 |
tttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgacattactgatga |
19649 |
T |
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| Q |
217 |
actgattgcatccattccggatgt |
240 |
Q |
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|||||||||||||||||| ||||| |
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| T |
19650 |
actgattgcatccattcctgatgt |
19673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 24674881 - 24674658
Alignment:
| Q |
17 |
gaaaatggcgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttaccatgatagtg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24674881 |
gaaaatggtgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttaccatgatagtg |
24674782 |
T |
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| Q |
117 |
tttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgaaattactgatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24674781 |
tttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgacattactgatga |
24674682 |
T |
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| Q |
217 |
actgattgcatccattccggatgt |
240 |
Q |
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| T |
24674681 |
actgattgcatccattcctgatgt |
24674658 |
T |
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