View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_373 (Length: 249)
Name: NF10954A_low_373
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_373 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4145986 - 4145746
Alignment:
| Q |
1 |
tagcacgttgctaaaggcaactaattgcaaactcaatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatga |
100 |
Q |
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| T |
4145986 |
tagcacgttgctaaagtcaactaattgcaaactcaatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatga |
4145887 |
T |
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| Q |
101 |
aacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagttataacaaaaac |
200 |
Q |
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| T |
4145886 |
aacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaac |
4145787 |
T |
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| Q |
201 |
cacttgttcataacattcctcatattttgcacatattattc |
241 |
Q |
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| T |
4145786 |
cacttgttcataacattcctcatattttgcacattttattc |
4145746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 4124568 - 4124500
Alignment:
| Q |
84 |
tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaa |
153 |
Q |
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| T |
4124568 |
tttgaataggaatatgttacaaattacaaa-ctcatcaaaccaaactaagttctagtattcctcaaaaaa |
4124500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 4153885 - 4153845
Alignment:
| Q |
115 |
ctcatcaaaccaaattaaatcctagtattcctcaaaaaaca |
155 |
Q |
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| T |
4153885 |
ctcattaaaccaaactaaatcctagtattcctcaaaaaaca |
4153845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 4135027 - 4134944
Alignment:
| Q |
159 |
ttttgttacatgttcatggctttt-ctaagttataacaaaaaccacttgttcataacattcctcatattttgcacatattattc |
241 |
Q |
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| T |
4135027 |
ttttgttacacatttatggctttttctaagtcataatataaatgacttattcattacattcctcatattttgcacattttattc |
4134944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 4135160 - 4135044
Alignment:
| Q |
43 |
atctcaacgactccacaattcaacaa---cttcttccacgtgaa--tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcct |
137 |
Q |
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| T |
4135160 |
atctcaatgacgccacaattcaacaataacatcttccacatgatagtttgattaggaacatgttacaaattacaaa-ctcataaagcctatctaagttct |
4135062 |
T |
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| Q |
138 |
agtattcctcaaaaaaca |
155 |
Q |
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|||||||||||||||||| |
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| T |
4135061 |
agtattcctcaaaaaaca |
4135044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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