View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_378 (Length: 249)
Name: NF10954A_low_378
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_378 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29668834 - 29669076
Alignment:
| Q |
1 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
100 |
Q |
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| T |
29668834 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
29668933 |
T |
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| Q |
101 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29668934 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccgaa |
29669033 |
T |
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| Q |
201 |
agttgaggagaaaataatcaaggagttaaccactgttcttgag |
243 |
Q |
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| T |
29669034 |
agttgaggagaaaataatcaaggagttaaccactgttcttgag |
29669076 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 11315133 - 11315194
Alignment:
| Q |
124 |
aacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggt |
185 |
Q |
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| T |
11315133 |
aacttcatcctagctggacgtgacacgtcatcagttgcgttgagctggttcttttggttggt |
11315194 |
T |
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