View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_38 (Length: 427)
Name: NF10954A_low_38
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 88 - 427
Target Start/End: Original strand, 32060103 - 32060442
Alignment:
| Q |
88 |
aacacataaatgagaagattgatatatctaatgtattaaaattttaaataaagatttagtgtttgactcacttgagtgtttgctcttagtccaacatgat |
187 |
Q |
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| T |
32060103 |
aacatataaatgagaagattgatatatctaatgtattaaaattttaaataaagatctagtgtttgactcacttgagtgtttgctcttggtccaacatgat |
32060202 |
T |
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| Q |
188 |
gattcattgggctcccctcatgactcaacaatggtatcaaaactaatgatttgcgtatcaaaattcctcctaacaatagtagttagacgatatgtcacat |
287 |
Q |
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| T |
32060203 |
gatttactgggctcccctcgtgactcaacaatggtatcaaaactaatgatttgcgtatcaaaattcctcctaacaatagtagttagacgatgtgtcacat |
32060302 |
T |
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| Q |
288 |
tgatgtatctctacttggaataatgtttggaaatgggaggggctcaaagaataaaatgctttgtttggttgctttataatgatggattgaagactaagga |
387 |
Q |
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| T |
32060303 |
tgatgtatgtctacttggaataatgtttggaaatgggaggggctcaaagaataaaatgctttgtttggttgctttataatgatggattgaagactaagga |
32060402 |
T |
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| Q |
388 |
tgtaagatctatatatgatatgggtacaaatttgttctga |
427 |
Q |
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| T |
32060403 |
tgtaagatctatatatgatatgggtacaaattcgttctga |
32060442 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 37258011 - 37258096
Alignment:
| Q |
296 |
ctctacttggaataatgtttggaaatgggaggggc-tcaaagaataaaatgctttgtttggttgctttataatgatggattgaaga |
380 |
Q |
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| T |
37258011 |
ctctacctggaataatgtttgaaaatgagaggagcctcaaaaaataaaatgctttctttggctgctttacaattatggattgaaga |
37258096 |
T |
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